View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_13 (Length: 521)
Name: NF0549_low_13
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_13 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Original strand, 15710 - 16193
Alignment:
| Q |
9 |
agcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaa |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15710 |
agcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaa |
15809 |
T |
|
| Q |
109 |
aatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatc |
208 |
Q |
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| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15810 |
actatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatc |
15909 |
T |
|
| Q |
209 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattatctacgcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
15910 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctacgcat |
16009 |
T |
|
| Q |
309 |
caagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16010 |
caagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttc |
16109 |
T |
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| Q |
409 |
tacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
492 |
Q |
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| T |
16110 |
tacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
16193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Original strand, 25878 - 26361
Alignment:
| Q |
9 |
agcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaa |
108 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25878 |
agcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaa |
25977 |
T |
|
| Q |
109 |
aatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatc |
208 |
Q |
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| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25978 |
actatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatc |
26077 |
T |
|
| Q |
209 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattatctacgcat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26078 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctacgcat |
26177 |
T |
|
| Q |
309 |
caagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26178 |
caagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttc |
26277 |
T |
|
| Q |
409 |
tacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
492 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26278 |
tacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
26361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 9 - 492
Target Start/End: Original strand, 36044 - 36527
Alignment:
| Q |
9 |
agcagagagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaa |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36044 |
agcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaa |
36143 |
T |
|
| Q |
109 |
aatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatc |
208 |
Q |
| |
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| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36144 |
actatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatc |
36243 |
T |
|
| Q |
209 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgataattatctacgcat |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36244 |
ttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctacgcat |
36343 |
T |
|
| Q |
309 |
caagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttc |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36344 |
caagatcgtgtccattgctccatccgagaccaatgaaatccactaccgcaacttgttttggcaaaatgaggccaatataaattgggttaactaccagttc |
36443 |
T |
|
| Q |
409 |
tacaaccaatctaatgctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
492 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36444 |
tacaaccaatctaaagctgtatccacacttgacgactttctaaaactctatgaccaggtatcaagaaactacaaacctagtata |
36527 |
T |
|
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