View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_14 (Length: 460)

Name: NF0549_low_14
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_14
NF0549_low_14
[»] chr3 (2 HSPs)
chr3 (9-431)||(3567375-3567797)
chr3 (79-320)||(32239550-32239791)
[»] chr1 (1 HSPs)
chr1 (25-200)||(10431361-10431536)
[»] scaffold0257 (1 HSPs)
scaffold0257 (70-324)||(14155-14409)
[»] chr6 (1 HSPs)
chr6 (26-169)||(24371611-24371753)


Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Complemental strand, 3567797 - 3567375
Alignment:
Q  9 gagatgaagaaggctcggttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgacca 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3567797 gagacgaagaaggctcggttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgacca 3567698  T
Q  109 agtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccgtgtatggtttgtctcccttattaaaaatca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3567697 agtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccgtgtatggtttgtctcccttattaaaaatca 3567598  T
Q  209 aacgaccccttagagcattttgacattcaactaaacccttagaatagtcttcctgttcaatcctaatggaaagtgcatcccctttgatgcagggaaccgg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3567597 aacgaccccttagagcattttgacattcaactaaacccttagaatagtcttcctgttcaatcctaatggaaagtgcatcccctttgatgcagggaaccag 3567498  T
Q  309 taaaggagcctcctcctagtgcgatggattgctgcaccctaacacaaccccaaatgatttttgaggcaccgtaataaattgtgccgatgcagtaacattc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3567497 taaaggagcctcctcctagtgcgatggattgctgcaccctaacacaaccccaaatgatttttgaggcaccgtaataaattgtgccgatgcagtaacattc 3567398  T
Q  409 tgtgaagcgagtatagcattctg 431  Q
    |||||||||||||||||||||||    
T  3567397 tgtgaagcgagtatagcattctg 3567375  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 320
Target Start/End: Original strand, 32239550 - 32239791
Alignment:
Q  79 tcaaaaagaaaatcataatacccccgaccaagtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccg 178  Q
    |||||||| ||||||||||| || |  ||| |||||||||||||| |||| | || |||| |||| | ||| ||||| ||||  || ||| |   |||||    
T  32239550 tcaaaaaggaaatcataatagcctctgccaggtgaaaccattttccatttcttaatcatcctccataacttgcctaacttagcagctaaacctctcgccg 32239649  T
Q  179 tgtatggtttgtctcccttattaaaaatcaaacgaccccttagagcattttgacattcaactaaacccttagaatagtcttcctgttcaatcctaatgga 278  Q
    |||| |||||||| || ||||| ||| |||  |  ||||  || ||||| ||||||||||  || || |||||||| ||||||||| || | | |||  |    
T  32239650 tgtaaggtttgtcgcctttattcaaagtcagtcttccccacagggcattctgacattcaaacaatcctttagaatattcttcctgtccatttcgaataca 32239749  T
Q  279 aagtgcatcccctttgatgcagggaaccggtaaaggagcctc 320  Q
    ||| ||||| || |||||||| ||||| |  |||||||||||    
T  32239750 aagagcatcacccttgatgcaaggaactgaaaaaggagcctc 32239791  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 200
Target Start/End: Complemental strand, 10431536 - 10431361
Alignment:
Q  25 ggttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgaccaagtgaaaccattttct 124  Q
    |||||||||||||||||||||||| |  ||||| |   ||| || ||||| |||||||||||||||| |||| ||||||  |  ||||||||||| |||     
T  10431536 ggttgtagagaaacagtgccagccgcttaaatatggtttaaatcatcaggatgctcaaaaagaaaattataaaacccccttctgagtgaaaccatcttcc 10431437  T
Q  125 atttgtgaaccatcttccaaacctttcctaatttagtcgccaaatcaagcgccgtgtatggtttgtctcccttatt 200  Q
    |||| || ||||||||||||||||| |||||||| |  ||||||||| ||| |||||| ||||| ||||| |||||    
T  10431436 atttatgtaccatcttccaaaccttgcctaatttggaagccaaatcatgcgtcgtgtaaggtttatctcctttatt 10431361  T

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Target: scaffold0257 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 70 - 324
Target Start/End: Complemental strand, 14409 - 14155
Alignment:
Q  70 tcaggttgctcaaaaagaaaatcataatacccccgaccaagtgaaaccattttctatttgtgaaccatcttccaaacctttcctaatttagtcgccaaat 169  Q
    ||||| |||||||| | |||||||||||| || | |||||| ||||||||  || ||| ||||||||||||||||| ||| || |||||||  |||||||    
T  14409 tcaggatgctcaaacataaaatcataatatcctctaccaagcgaaaccatcgtccattggtgaaccatcttccaaaacttgccaaatttagaagccaaat 14310  T
Q  170 caagcgccgtgtatggtttgtctcccttattaaaaatcaaacgaccccttagagcattttgacattcaactaaacccttagaatagtcttcctgttcaat 269  Q
    || | || ||||| ||||| || || ||||| ||  |||  || || | ||| |||| |||||||||  | | |||||||||||| || |||||  ||||    
T  14309 cacgagctgtgtaaggtttatcgcctttattcaaggtcagccgtcctcgtagtgcatattgacattctgcaagacccttagaatattcatcctgaccaat 14210  T
Q  270 cctaatggaaagtgcatcccctttgatgcagggaaccggtaaaggagcctcctcc 324  Q
     ||||||||||| ||||| || || ||||| ||||| ||  | ||||||||||||    
T  14209 tctaatggaaagagcatctcccttaatgcaaggaactggatagggagcctcctcc 14155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 169
Target Start/End: Complemental strand, 24371753 - 24371611
Alignment:
Q  26 gttgtagagaaacagtgccagccacccaaatacgacctaagtcctcaggttgctcaaaaagaaaatcataatacccccgaccaagtgaaaccattttcta 125  Q
    ||||||||||||  |||||| || ||||||||||||  ||||| | ||| |||| ||||| |||||||||||| ||    |||||||||| ||||||| |    
T  24371753 gttgtagagaaatggtgccaacctcccaaatacgacgcaagtcattaggatgctaaaaaataaaatcataataacctattccaagtgaaatcattttcca 24371654  T
Q  126 tttgtgaaccatcttccaaacctttcctaatttagtcgccaaat 169  Q
    ||||||||||||||||| |||||| ||||| ||||  |||||||    
T  24371653 tttgtgaaccatcttcc-aaccttgcctaacttagcagccaaat 24371611  T

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