View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_16 (Length: 449)
Name: NF0549_low_16
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 439
Target Start/End: Original strand, 34437954 - 34438363
Alignment:
| Q |
30 |
tgttttggggtgagcaaatttgtccagagggaatgaatttatagtagtgactcaattgagtgtacataaatccatagttcaacaagattagctaagaatc |
129 |
Q |
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| T |
34437954 |
tgttttggggtgagcaaatttgtccagagggaatgaatttatagtagtgactcaattgagtgtacataaatccatagttcaacaagattagctaagaatc |
34438053 |
T |
|
| Q |
130 |
tataacatccacacaatgaagattattttactgccacatggcaatcacttattgcatgaatggcattggtctctgacacctagagacaaaggtctagatc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34438054 |
tataacatccacacaatgaagattattttactgccacatggcaatcacttattgcatgaatggcattggtctctgacacctagagacaaaggtctagatc |
34438153 |
T |
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| Q |
230 |
ctgctagaattacatccctttccaattctaatgagtaattgttgttactaccacataaagcttgtatagtcctcatctcattaggttcatgcaatgacaa |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34438154 |
ctgctagaattacatccctttccaattctaatgagtaattgttgttactaccacataaagcttgtatagtcctcatctcattagtttcatgcaatgacaa |
34438253 |
T |
|
| Q |
330 |
catgtttttgtttcattattggaattaaaagaagtgtttaccattaatatgtttgggttctctgaatacaagtcttacttcaaatgataaaatatattac |
429 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
34438254 |
catgtttttgtttcattattgttattaaaagaagtgtttaccattaatatgtttgggttctctaaataaaagtcttacttcaaatgataaaatatattac |
34438353 |
T |
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| Q |
430 |
tctcttcatc |
439 |
Q |
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|||||||||| |
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| T |
34438354 |
tctcttcatc |
34438363 |
T |
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