View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_17 (Length: 439)
Name: NF0549_low_17
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 78 - 413
Target Start/End: Original strand, 5288429 - 5288764
Alignment:
| Q |
78 |
cagagatcagtaactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatggtaaattggtaatgg |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5288429 |
cagagatcagtaactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatcgtaaattggtaatgg |
5288528 |
T |
|
| Q |
178 |
tggttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaa |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5288529 |
tggttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaa |
5288628 |
T |
|
| Q |
278 |
gaacaacaaatagatagatgatcacaccaaacttctaataaaaagaacaaatactaaatgaatggaaacattttccttgacaaaatataatgaatgacat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5288629 |
gaacaacaaatagatagatgatcacaccaaacttctaataaaaagaacaaatactaaatgaatggaaacattttccctgacaaaatataatgaatgacat |
5288728 |
T |
|
| Q |
378 |
ggaacacttaaaaagaacacaagatatcaaaattga |
413 |
Q |
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| T |
5288729 |
ggaacacttaaaaagaacacaagatatcaaaattga |
5288764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 78 - 313
Target Start/End: Complemental strand, 8034984 - 8034753
Alignment:
| Q |
78 |
cagagatcagtaactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatggtaaattggtaatgg |
177 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||| |
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| T |
8034984 |
cagagatcagtaaccaaccttgaaagaaggtactgggagcaacaaaatcaaacctaagaacatagcataacacagttaattaattgtaaattgataatgg |
8034885 |
T |
|
| Q |
178 |
tggttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaa |
277 |
Q |
| |
|
|||||| |||| ||||||||||| ||| |||||| |||| |||||||| ||||||||||||||||| |||||||||||||||| |||||| | ||| |
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| T |
8034884 |
tggttgtgatcaacgagtgttgaatacttgagagcatcgggaacgatggtaacgagacggttaattaaaggtttggtccaacaggaattg----ggagaa |
8034789 |
T |
|
| Q |
278 |
gaacaacaaatagatagatgatcacaccaaacttct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
8034788 |
gaacaacaaatagatagatgatcacaccaaacttct |
8034753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 51380100 - 51380273
Alignment:
| Q |
88 |
taactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatggtaaattggtaatggtggt---tgc |
184 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | || | || | |||||||||||| |||||||||||| |||| ||| |
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| T |
51380100 |
taactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaac-acagaaaaaaa--gttaattaatggaaaattggtaatgctggtagttgc |
51380196 |
T |
|
| Q |
185 |
gatcgacg----agtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtcca |
257 |
Q |
| |
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||| |||| |||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51380197 |
gatggacggacgagtgttgagtacctaagagcatcgagaacgatgataacgagacggttaattgcaggtttggtcca |
51380273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 42966069 - 42965997
Alignment:
| Q |
314 |
aataaaaagaacaaatactaaatgaatggaaacattttccttgacaaaatataatgaatgacatggaacactt |
386 |
Q |
| |
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||||||||| |||||||||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||||| |
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| T |
42966069 |
aataaaaaggacaaatactagatgaatgaaaatatttttcttgacaaaatataataaatgacatggaacactt |
42965997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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