View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_21 (Length: 391)
Name: NF0549_low_21
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 25777435 - 25777280
Alignment:
| Q |
30 |
ccacaaagatcacaatcaagtggccaagacactcctatattattactaaggcgtgctcgagttgggaaccacccatggcacaccctatgaacataattct |
129 |
Q |
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| T |
25777435 |
ccacaaagatcacaatcaagtggccaagacactcctatattattactaaggcgtgctcgagttgggaaccacccatggcacaccctatgaacataattct |
25777336 |
T |
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| Q |
130 |
tgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
185 |
Q |
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| T |
25777335 |
tgacctgaggaggtactttgagtttccatattaaatttcaccgacctaaaacatgt |
25777280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 277 - 382
Target Start/End: Complemental strand, 1538928 - 1538823
Alignment:
| Q |
277 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538928 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
1538829 |
T |
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| Q |
377 |
tattat |
382 |
Q |
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|||||| |
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| T |
1538828 |
tattat |
1538823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 277 - 382
Target Start/End: Complemental strand, 17768975 - 17768870
Alignment:
| Q |
277 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17768975 |
ctatataattttgcttctatttaagcttatagggtgatggctatctagcttgtgaagtttgtgtttcggcctacatattgtttttgttttcttactgtag |
17768876 |
T |
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| Q |
377 |
tattat |
382 |
Q |
| |
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|||||| |
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| T |
17768875 |
tattat |
17768870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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