View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_23 (Length: 388)

Name: NF0549_low_23
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_23
NF0549_low_23
[»] chr1 (4 HSPs)
chr1 (152-319)||(2340513-2340680)
chr1 (152-319)||(6202006-6202173)
chr1 (235-321)||(5633170-5633256)
chr1 (1-57)||(52926017-52926073)
[»] scaffold0019 (1 HSPs)
scaffold0019 (152-319)||(17842-18009)
[»] chr7 (10 HSPs)
chr7 (152-319)||(841259-841426)
chr7 (152-319)||(848435-848602)
chr7 (152-319)||(1206439-1206606)
chr7 (152-319)||(8813510-8813677)
chr7 (166-319)||(23883831-23883984)
chr7 (152-319)||(16397500-16397667)
chr7 (235-319)||(30373997-30374081)
chr7 (235-319)||(9465613-9465697)
chr7 (170-219)||(802575-802624)
chr7 (170-219)||(16291442-16291491)
[»] chr5 (15 HSPs)
chr5 (152-319)||(29896192-29896359)
chr5 (152-319)||(26872146-26872313)
chr5 (152-319)||(1801192-1801359)
chr5 (152-319)||(7789888-7790055)
chr5 (152-319)||(7258978-7259145)
chr5 (152-319)||(12392469-12392636)
chr5 (166-318)||(22956009-22956161)
chr5 (152-319)||(5444255-5444422)
chr5 (152-319)||(17953047-17953214)
chr5 (152-319)||(31516255-31516422)
chr5 (152-319)||(36380021-36380188)
chr5 (152-319)||(37004693-37004860)
chr5 (235-319)||(11948454-11948538)
chr5 (235-319)||(15788772-15788856)
chr5 (170-219)||(34464648-34464697)
[»] scaffold0183 (1 HSPs)
scaffold0183 (152-319)||(31302-31469)
[»] scaffold0387 (1 HSPs)
scaffold0387 (152-319)||(6357-6524)
[»] chr6 (9 HSPs)
chr6 (152-319)||(20044915-20045082)
chr6 (152-319)||(24147730-24147897)
chr6 (152-319)||(620187-620354)
chr6 (169-319)||(2410953-2411103)
chr6 (152-319)||(20055157-20055324)
chr6 (171-319)||(2411485-2411634)
chr6 (152-319)||(9140448-9140615)
chr6 (152-319)||(16822045-16822212)
chr6 (235-319)||(27513102-27513186)
[»] chr8 (1 HSPs)
chr8 (152-319)||(21480222-21480389)
[»] chr3 (13 HSPs)
chr3 (152-319)||(6197473-6197640)
chr3 (152-319)||(15534156-15534323)
chr3 (152-319)||(8619513-8619680)
chr3 (166-319)||(8807403-8807556)
chr3 (166-310)||(21610833-21610977)
chr3 (152-319)||(5955002-5955169)
chr3 (152-319)||(37260813-37260980)
chr3 (152-316)||(46397533-46397697)
chr3 (152-215)||(15597173-15597236)
chr3 (152-215)||(15914485-15914548)
chr3 (235-319)||(46376304-46376388)
chr3 (170-219)||(20439101-20439150)
chr3 (268-319)||(15597069-15597120)
[»] scaffold0441 (1 HSPs)
scaffold0441 (152-319)||(10109-10276)
[»] chr4 (5 HSPs)
chr4 (152-319)||(15899789-15899956)
chr4 (153-319)||(14920423-14920589)
chr4 (166-316)||(16725095-16725245)
chr4 (166-319)||(22707037-22707190)
chr4 (235-319)||(18039416-18039500)
[»] scaffold0551 (2 HSPs)
scaffold0551 (152-319)||(4284-4451)
scaffold0551 (152-319)||(10398-10565)
[»] scaffold0104 (2 HSPs)
scaffold0104 (152-221)||(36529-36598)
scaffold0104 (240-319)||(29392-29471)
[»] scaffold0435 (2 HSPs)
scaffold0435 (152-316)||(12953-13117)
scaffold0435 (152-316)||(13629-13793)
[»] scaffold0002 (1 HSPs)
scaffold0002 (152-319)||(301852-302019)
[»] chr2 (2 HSPs)
chr2 (152-319)||(22945341-22945508)
chr2 (235-319)||(12379689-12379773)
[»] scaffold0029 (1 HSPs)
scaffold0029 (152-319)||(25109-25276)
[»] scaffold0094 (2 HSPs)
scaffold0094 (152-215)||(39522-39585)
scaffold0094 (268-319)||(39418-39469)
[»] scaffold0595 (1 HSPs)
scaffold0595 (235-321)||(9006-9092)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 2340680 - 2340513
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  2340680 acctgtgatgcatactattccacaaaatgaagaacccatcttccattcagggaacatggagacttatgatgaaatgagtaacttacgagaaaagtatgat 2340581  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2340580 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttggaaagactgcttacgatctctg 2340513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 6202173 - 6202006
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  || || || || ||| | |||| |  ||||| ||||||    
T  6202173 acctgtaatgcataccattccacaaaatgaagaacctatcttccattcagggaacatggaacccgatcatagagtgattgacttgcaggaaaaatatgat 6202074  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||||||||||||| || || ||||| ||||||||    
T  6202073 gaaatgcatcgagaaatgagggctctccgtgggaaaggaaaatttggaaaaaccgcttatgatctctg 6202006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 5633256 - 5633170
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctgct 321  Q
    ||||||| |||||||||||||| |  |||||| |||||||||||| ||  ||||| ||||| ||||||||||| |||||||||||||    
T  5633256 tacgagagaagtatgatgaactacgccgagacatgaaagctctccatgaaaaagggaaattcgggaagactgcgtacgatctctgct 5633170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 52926017 - 52926073
Alignment:
Q  1 ataatctccagaagttcattgttatctcctccactggcagcaggagcggctacagtg 57  Q
    |||| ||||| ||||||||||||| || ||||||  ||||||||||| |||||||||    
T  52926017 ataaactccaaaagttcattgttagcttctccacgagcagcaggagcagctacagtg 52926073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 18009 - 17842
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  18009 acctgtgatgcatactattccacaaaatgaagaacctatcttccattcagggaacatggaggcctatgatggagtgaatgacttacgagaaaagtatgat 17910  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17909 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttggaaagactgcttacgatctctg 17842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 841259 - 841426
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  841259 acctgtgatgcatactattccacaaaatgaagaacccatcttccattcagggaacatggatgcctatgatggagtgagtgacttacgagaaaagtatgat 841358  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  841359 gaactgcaacgagatgtgaaagctctccgtgggaaaggaaaatttggaaagactgcttacgatctctg 841426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 848435 - 848602
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  848435 acctgtgatgcatactattccacaaaatgaagaacccatcttccattcagggaacatggatgcctatgatggagtgagtgacttacgagaaaagtatgat 848534  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  848535 gaactgcaacgagatgtgaaagctctccgtgggaaaggaaaatttggaaagactgcttacgatctctg 848602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 1206439 - 1206606
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  1206439 acctgtgatgcatactattccacaaaatgaagaacccatcttccattcagggaacatggatgcctatgatggagtgagtgacttacgagaaaagtatgat 1206538  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1206539 gaactgcaacgagatgtgaaagctctccgtgggaaaggaaaatttggaaagactgcttacgatctctg 1206606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 8813510 - 8813677
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  8813510 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttacgggaaaaatatgat 8813609  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  8813610 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 8813677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 319
Target Start/End: Complemental strand, 23883984 - 23883831
Alignment:
Q  166 ccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgaga 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| | |||| || ||||| ||||||||| |||| |||||    
T  23883984 ccatcccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagagtgaatgacttgcgggaaaaatatgatgaaatgcatcgaga 23883885  T
Q  266 cgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
     ||||  |||||||  ||||||| ||||||||| ||||| ||||| ||| ||||    
T  23883884 agtgagggctctcctcgggaaagaaaaatttggaaagaccgcttatgatttctg 23883831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 16397667 - 16397500
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| || || |||| ||||||||| ||||| |||||||||||  | ||||| || || | | | ||  || |||||||||||||||||    
T  16397667 acctgtgatacatacaatcccgcaaactgaagaacctatctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 16397568  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||  |||||||  ||||| ||||||||||||||||| |||||||||||    
T  16397567 gaactacgccgagacatgaaagtcctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 16397500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 30374081 - 30373997
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||||||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  30374081 tacgagaaaagtatgatgaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 30373997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 9465613 - 9465697
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||| ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  9465613 tacgagaaaagtatgacgaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 9465697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 802624 - 802575
Alignment:
Q  170 tccacaaaatgaagaacccatcttccattcagggaacatggaggcctatg 219  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||||||    
T  802624 tccacaaaatgaagaacccatcttccattcaaggagtatgaaggcctatg 802575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 16291491 - 16291442
Alignment:
Q  170 tccacaaaatgaagaacccatcttccattcagggaacatggaggcctatg 219  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||||||    
T  16291491 tccacaaaatgaagaacccatcttccattcaaggagtatgaaggcctatg 16291442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 29896192 - 29896359
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||    
T  29896192 acctgtgatgcatactattccacaaaatgaagaatccatcttccattcagggaacatggagacttacgatggaatgagtaacttacgagaaaagtatgat 29896291  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29896292 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttggaaagactgcttacgatctctg 29896359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 26872146 - 26872313
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26872146 acctgtgatgcatactattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggagtgagtgacttacgagaaaagtatgat 26872245  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||    
T  26872246 gaactgcaacgagatgtgaaagctctccgtgggaaggaaaaatttggaaagactgcttacgatctctg 26872313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 1801192 - 1801359
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  1801192 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttacgggaaaaatatgat 1801291  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  1801292 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 1801359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 7789888 - 7790055
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  7789888 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttacgggaaaaatatgat 7789987  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  7789988 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 7790055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 7259145 - 7258978
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | |||| || ||||| ||||||    
T  7259145 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttgcgggaaaaatatgat 7259046  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  7259045 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 7258978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 12392636 - 12392469
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||| || | | | |||| || ||||| ||||||    
T  12392636 acctatgatgcataccgttccacaaaatgaagaacccatcttccattcagggaacatggagcccgacgatagagtaaatgacttgcgggaaaaatatgat 12392537  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| ||||| ||||  |||||||  ||||||| ||||||||| ||||| ||||| ||||||||    
T  12392536 gaaatgcatcgagaagtgagggctctcctcgggaaagaaaaatttggaaagaccgcttatgatctctg 12392469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 166 - 318
Target Start/End: Complemental strand, 22956161 - 22956009
Alignment:
Q  166 ccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgaga 265  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||| || ||| | |||| |  ||||| ||||||||| |||| |||||    
T  22956161 ccattccacaaaacgaagaacctatcttccattcagggaacatggaggcctgtgatagagtgaatgacttgcaggaaaaatatgatgaaatgcatcgaga 22956062  T
Q  266 cgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctct 318  Q
      |||   ||||||||||||||||||||||||  ||||| |||||||||||||    
T  22956061 aatgaggtctctccgtgggaaaggaaaatttgaaaagaccgcttacgatctct 22956009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 5444422 - 5444255
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| |||||| || ||||| |||||||||||    ||||| || || ||| | ||  || |||||||||||||||||    
T  5444422 acctgtgatacatacaattccgcaaactgaagagcctatctttcattcagggaatgcagaggcttacgagggagtaagcgacctacgagaaaagtatgat 5444323  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  ||||||||||||||||||| ||  ||||| ||||||||||||||||| ||||| |||||    
T  5444322 gaactacgccgagacgtgaaagctctccatgaaaaagggaaatttgggaagactgcgtacgacctctg 5444255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 17953047 - 17953214
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| ||||||||| ||||| |||||||||||  | ||||| || || | | | ||  || ||| |||||||||||||    
T  17953047 acctgtgatacatacaattccgcaaactgaagaacctatctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacaagaaaagtatgat 17953146  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  17953147 gaactacgccgagacatgaaagccctccgtgataaagggaaatttgggaagactgcgtacgatctctg 17953214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 31516255 - 31516422
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| || || |||| ||||||||| ||||| |||||||||||  | ||||| || || | | | ||  || |||||||||||||||||    
T  31516255 acctgtgatacatacaatcccgcaaactgaagaacctatctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 31516354  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  31516355 gaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 31516422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 36380188 - 36380021
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| |||||| || ||||| |||||||||||    ||||| || || | | | ||  || |||||| ||||||||||    
T  36380188 acctgtgatacatacaattccgcaaactgaagagcctatctttcattcagggaatgcagaggcttacgaagaagtaagcgacctacgagcaaagtatgat 36380089  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| |||||||||||| ||  ||||| ||||| ||||||||||| |||||||||||    
T  36380088 gaactacgccgagacatgaaagctctccatgaaaaagggaaattcgggaagactgcgtacgatctctg 36380021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 37004860 - 37004693
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| |||||| || ||||| |||||||||||    ||||| || || | | | ||  || |||||| ||||||||||    
T  37004860 acctgtgatacatacaattccgcaaactgaagagcctatctttcattcagggaatgcagaggcttacgaagaagtaagcgacctacgagcaaagtatgat 37004761  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| |||||||||||| ||  ||||| ||||| ||||||||||| |||||||||||    
T  37004760 gaactacgccgagacatgaaagctctccatgaaaaagggaaattcgggaagactgcgtacgatctctg 37004693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 11948538 - 11948454
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||| |||||||||||||| |  |||||| |||||||||||| ||  ||||| ||||| ||||||||||| |||||||||||    
T  11948538 tacgagagaagtatgatgaactacgccgagacatgaaagctctccatgaaaaagggaaattcgggaagactgcgtacgatctctg 11948454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 15788856 - 15788772
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||| |||||||||||||| |  |||||| |||||||||||| ||  ||||| ||||| ||||||||||| |||||||||||    
T  15788856 tacgagagaagtatgatgaactacgccgagacatgaaagctctccatgaaaaagggaaattcgggaagactgcgtacgatctctg 15788772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 34464648 - 34464697
Alignment:
Q  170 tccacaaaatgaagaacccatcttccattcagggaacatggaggcctatg 219  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||||||    
T  34464648 tccacaaaatgaagaacccatcttccattcaaggagtatgaaggcctatg 34464697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 31302 - 31469
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||||||| | |||||||||||||| || |||||||| ||||||||||||||||||||    
T  31302 acctgtgatgcatactattccacaaaatgaagagcctatcttccattcagaggacatggaggcctataatagaatgagtgacttacgagaaaagtatgat 31401  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  31402 gaactgcaacgagatgtgaaagctctccgtgggaaagaaaaatttggaaagactgcttacgatctctg 31469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 6524 - 6357
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||| |||||| ||||||||||||||| || ||| | |||||| |||||||||||||    
T  6524 acctgtgatgcatactattccacaaaatgacgaacccatcatccatttagggaatatggaggcctatgatagagtgaatgacttacaagaaaagtatgat 6425  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  6424 gaactgcaacgagacatgaaaactctctgtgggaaagaaaaatttggaaagaccgcttacgatctctg 6357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 20045082 - 20044915
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  20045082 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttacgggaaaaatatgat 20044983  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  20044982 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 20044915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 24147897 - 24147730
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  24147897 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagtccgatgatagaatgaatgacttacgggaaaaatatgat 24147798  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  24147797 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 24147730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 620354 - 620187
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | |||| || ||||| ||||||    
T  620354 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttgcgggaaaaatatgat 620255  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  620254 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 620187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 2411103 - 2410953
Alignment:
Q  169 ttccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgagacgt 268  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| || |||| || ||| | ||||||  |||||||||||||||||||| |||||  |    
T  2411103 ttccacaaattgaagaacccatcttccattcagggaatatggaggtctgtgatagagtgaatgacttacaggaaaagtatgatgaactgcagcgagatat 2411004  T
Q  269 gaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    || ||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  2411003 gagagctctccgtgggaaagaaaaatttggaaagaccgcttacgatctctg 2410953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 20055324 - 20055157
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||  || ||||| || ||| | |||| |  ||||| ||||||    
T  20055324 acctgtaatacataccattccacaaaatgaagaacctatcttccattcagggaacatggaacccgatgatagagtgattgacttgcaggaaaaatatgat 20055225  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||| | || |||||||||||| ||||| ||||||||||||||    
T  20055224 gaaatgcatcgagaaatgagggctctccgcgagagaggaaaatttggaaagaccgcttacgatctctg 20055157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 2411485 - 2411634
Alignment:
Q  171 ccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgagacgtga 270  Q
    |||||||||||||||| |||||||||||||||||| ||||||| || |||| || ||| | ||||||  |||||||||||||||||||| |||||  |||    
T  2411485 ccacaaaatgaagaactcatcttccattcagggaatatggaggtctgtgatagagtgaatgacttacaggaaaagtatgatgaactgcagcgagatatga 2411584  T
Q  271 aagctctccgtgggaaa-ggaaaatttgggaagactgcttacgatctctg 319  Q
     |||||| |||||||||   ||||||||| ||||| ||||||||||||||    
T  2411585 gagctcttcgtgggaaataaaaaatttggaaagaccgcttacgatctctg 2411634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 9140615 - 9140448
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| ||||||||| ||||| |||||||||||  | ||||| || || | | | ||  || |||||||||||||||||    
T  9140615 acctgtgatacatacaattccgcaaactgaagaacctatctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 9140516  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  9140515 gaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 9140448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 16822212 - 16822045
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||| |||| |||||| || ||||| |||||| ||||    ||||| || || ||| | ||  |  |||||||||||||||||    
T  16822212 acctgtgatgcatacaattccgcaaactgaagagcctatctttcattcaaggaatgcagaggcttacgagggagtaagcgatctacgagaaaagtatgat 16822113  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  16822112 gaactacgccgagacatgaaagctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 16822045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 27513102 - 27513186
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||||||||| |  |||||| |||||||||||| ||  ||||| ||||||||||||||||| |||||||||||    
T  27513102 tacgagaaaagtatgatgaactacgccgagacatgaaagctctccatgaaaaagggaaatttgggaagactgcgtacgatctctg 27513186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 21480389 - 21480222
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  21480389 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttacgggaaaaatatgat 21480290  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| |||||  |||| ||||||||    
T  21480289 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccacttatgatctctg 21480222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 6197473 - 6197640
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | ||||||| ||||| ||||||    
T  6197473 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccaatgatagaatgaatgacttacgggaaaaatatgat 6197572  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| |||||  |||| ||||||||    
T  6197573 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccacttatgatctctg 6197640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 15534323 - 15534156
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| | |||| |  ||||| ||||||    
T  15534323 acctatgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttgcaggaaaaatatgat 15534224  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  ||||||||||||||| |||||||||| ||||| ||||| ||||||||    
T  15534223 gaaatgcatcgagaaatgagggctctccgtgggaaaagaaaatttggaaagaccgcttatgatctctg 15534156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 8619513 - 8619680
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||| | |||| || ||||| ||||||    
T  8619513 acctatgacgcataccattccataaaatgaagaacccatcttccattcagggaacatggagcccgatgatagaatgaatgacttgcgggaaaaatatgat 8619612  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  8619613 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 8619680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 166 - 319
Target Start/End: Original strand, 8807403 - 8807556
Alignment:
Q  166 ccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgaga 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| | |||| || ||||| ||||||||| |||| |||||    
T  8807403 ccatcccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagagtgaatgacttgcgggaaaaatatgatgaaatgcatcgaga 8807502  T
Q  266 cgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
     ||||  |||||||  ||||||| ||||||||| ||||| ||||| ||||||||    
T  8807503 agtgagggctctcctcgggaaagaaaaatttggaaagaccgcttatgatctctg 8807556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 310
Target Start/End: Original strand, 21610833 - 21610977
Alignment:
Q  166 ccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgaga 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || ||||| || ||| | |||| || ||||| ||||||||| |||| |||||    
T  21610833 ccatcccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgatagagtgaatgacttgcgggaaaaatatgatgaaatgcatcgaga 21610932  T
Q  266 cgtgaaagctctccgtgggaaaggaaaatttgggaagactgctta 310  Q
     ||||  |||||||  ||||||| ||||||||| ||||| |||||    
T  21610933 agtgagggctctcctcgggaaagaaaaatttggaaagaccgctta 21610977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 5955169 - 5955002
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| || || |||| ||||||||| ||||| |||||||||||  | ||||| || || | | | ||  || |||||||||||||||||    
T  5955169 acctgtgatacatacaatcccgcaaactgaagaacctatctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 5955070  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  5955069 gaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 5955002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 37260980 - 37260813
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| ||||||||| ||||| |||||| ||||  | ||||| || || | | | ||  || |||||||||||||||||    
T  37260980 acctgtgatacatacaattccgcaaactgaagaacctatctttcattcaaggaatgtagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 37260881  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  37260880 gaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 37260813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 316
Target Start/End: Complemental strand, 46397697 - 46397533
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||| |||| |||||| || ||||| |||||| ||||    ||||| || || ||| | ||  |  |||||||||||||||||    
T  46397697 acctgtgatgcatacaattccgcaaactgaagagcctatctttcattcaaggaatgcagaggcttacgagggagtaagcgatctacgagaaaagtatgat 46397598  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatct 316  Q
    ||||| |  |||||| ||||||||||||| | || |||||||||||| ||||| |||||||||||    
T  46397597 gaactacgccgagacatgaaagctctccgcgagagaggaaaatttggaaagaccgcttacgatct 46397533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 15597236 - 15597173
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcc 215  Q
    ||||||||||||||| |||||||||| ||||||||| || |||||||||||||| |||||||||    
T  15597236 acctgtgatgcatacaattccacaaagtgaagaaccaattttccattcagggaatatggaggcc 15597173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 15914485 - 15914548
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcc 215  Q
    ||||||||||||||| |||||||||| ||||||||| || |||||||||||||| |||||||||    
T  15914485 acctgtgatgcatactattccacaaagtgaagaaccaattttccattcagggaatatggaggcc 15914548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 46376304 - 46376388
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||||| |||||||||||||| |  |||||| |||||||||||| ||  ||||| ||||| ||||||||||| |||||||||||    
T  46376304 tacgagagaagtatgatgaactacgccgagacatgaaagctctccatgaaaaagggaaattcgggaagactgcgtacgatctctg 46376388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 20439101 - 20439150
Alignment:
Q  170 tccacaaaatgaagaacccatcttccattcagggaacatggaggcctatg 219  Q
    ||||||||||||||||||||||||||||||| |||  ||| |||||||||    
T  20439101 tccacaaaatgaagaacccatcttccattcaaggagtatgaaggcctatg 20439150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 15597120 - 15597069
Alignment:
Q  268 tgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||||||||  || ||||||||||| || |||||||||||    
T  15597120 tgaaagctctccgtgggaaagagaagtttgggaagaccgcctacgatctctg 15597069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0441 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0441
Description:

Target: scaffold0441; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 10109 - 10276
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| || ||| | |||| || ||||| ||||||    
T  10109 acctatgatgcataccattccacaaaatgaagaacccatattccattcagggaacatggagcccgatgatagagtgaatgacttgcgggaaaaatatgat 10208  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  10209 gaaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 10276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 15899956 - 15899789
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||  | |||| |  ||||| |||||     
T  15899956 acctatgatgcataccattccacaaaatgaagaacccatcttccactcagggaacgtggaggccgatgatagagtggatgacttgcaggaaaaatatgac 15899857  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  |||||||||||||||||| ||||||| ||||| ||||||||||||||    
T  15899856 gaaatgcatcgagaaatgagggctctccgtgggaaaggataatttggaaagaccgcttacgatctctg 15899789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 153 - 319
Target Start/End: Original strand, 14920423 - 14920589
Alignment:
Q  153 cctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatg 252  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  || ||||| || ||| | |||| |  ||||| |||||||    
T  14920423 cctgtaatgcataccattccacaaaatgaagaacctatcttccattcagggaacatggaacccgatgatagagtgattgacttgcaggaaaaatatgatg 14920522  T
Q  253 aactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    || |||| |||||  |||  |||||||||||||||| ||||||||| ||||| ||||| ||||||||    
T  14920523 aaatgcatcgagaaatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatctctg 14920589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 166 - 316
Target Start/End: Complemental strand, 16725245 - 16725095
Alignment:
Q  166 ccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgaga 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| || |||||  ||||| | |||| || ||||| ||||||||| |||| |||||    
T  16725245 ccatcccacaaaatgaagaacccatcttccattcagggaacatggagcccgatgataaaatgaatgacttgcgggaaaaatatgatgaaatgcatcgaga 16725146  T
Q  266 cgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatct 316  Q
      |||  |||||||||||||||| ||||||||| ||||| ||||| |||||    
T  16725145 aatgagggctctccgtgggaaagaaaaatttggaaagaccgcttatgatct 16725095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 166 - 319
Target Start/End: Original strand, 22707037 - 22707190
Alignment:
Q  166 ccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgatgaactgcaacgaga 265  Q
    |||| |||||||||||||||||||||||||||||||||||||||||  || ||||| || ||| | |||| || ||||| ||||||||| |||| |||||    
T  22707037 ccatcccacaaaatgaagaacccatcttccattcagggaacatggaacccgatgatagagtgaatgacttgcgggaaaaatatgatgaaatgcatcgaga 22707136  T
Q  266 cgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
     ||||  |||||||  ||||||| ||||||||| ||||| ||||| ||||||||    
T  22707137 agtgagggctctcctcgggaaagaaaaatttggaaagaccgcttatgatctctg 22707190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 18039416 - 18039500
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||||||||| |  |||||| |||||||||||| ||  ||||| ||||||||||||||||| |||||||||||    
T  18039416 tacgagaaaagtatgatgaactacgccgagacatgaaagctctccatgaaaaagggaaatttgggaagactgcgtacgatctctg 18039500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 4451 - 4284
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||  | ||||    ||||| ||||||    
T  4451 acctgtaatgcataccattccataaaatgaagaacccatcttccattcagggaacatggaggccgatgatagagtggatgacttgtaggaaaaatatgat 4352  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  ||||||||||||| |||||||||||| || || |||||| |||||||    
T  4351 gaaatgcatcgagaaatgagggctctccgtgggagaggaaaatttggaaaaaccgcttacaatctctg 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 319
Target Start/End: Complemental strand, 10565 - 10398
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||  | ||||    ||||| ||||||    
T  10565 acctgtaatgcataccattccataaaatgaagaacccatcttccattcagggaacatggaggccgatgatagagtggatgacttgtaggaaaaatatgat 10466  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||| |||| |||||  |||  ||||||||||||| |||||||||||| || || |||||| |||||||    
T  10465 gaaatgcatcgagaaatgagggctctccgtgggagaggaaaatttggaaaaaccgcttacaatctctg 10398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 36598 - 36529
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  36598 acctgtgatgcataccattccacaaaatgaagaacccatcttccactcagggaacatggaggccgatgat 36529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 29471 - 29392
Alignment:
Q  240 gaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| ||||| ||| |||| |||||  |||  |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  29471 gaaaaatatgacgaaatgcatcgagaaatgagggctctccgtgggaaaggaaaatttggaaagaccgcttacgatctctg 29392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 152 - 316
Target Start/End: Complemental strand, 13117 - 12953
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||| |||| ||||  | ||| | |||| |  ||||| |||||     
T  13117 acctgtgatgcatactattccacaaaatgaagaactcgttttccattcagggaacatggaagcctgtgatatagtgaatgacttgcaggaaaaatatgac 13018  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatct 316  Q
    ||| |||| ||||| ||||  |||||| ||| || |||||||||||| ||||| |||||||||||    
T  13017 gaaatgcatcgagaagtgagggctctctgtgagagaggaaaatttggaaagaccgcttacgatct 12953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 152 - 316
Target Start/End: Complemental strand, 13793 - 13629
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||| |||| ||||  | ||| | |||| |  ||||| |||||     
T  13793 acctgtgatgcatactattccacaaaatgaagaactcgttttccattcagggaacatggaagcctgtgatatagtgaatgacttgcaggaaaaatatgac 13694  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatct 316  Q
    ||| |||| ||||| ||||  |||||| ||| || |||||||||||| ||||| |||||||||||    
T  13693 gaaatgcatcgagaagtgagggctctctgtgagagaggaaaatttggaaagaccgcttacgatct 13629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 301852 - 302019
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| || || |||| ||||||||| ||||| |||||||||||  | ||||| || || | | | ||  || |||||||||||||||||    
T  301852 acctgtgatacatacaatcccgcaaactgaagaacctatctttcattcagggaatgtagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 301951  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  301952 gaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 302019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 22945341 - 22945508
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| |||||| || ||||| |||||||||||    ||||| || || ||| | ||  || |||||||||||||||||    
T  22945341 acctgtgatacatacaattccgcaaactgaagagcctatctttcattcagggaatgcagaggcttacgagggagtaagcgacctacgagaaaagtatgat 22945440  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| |||||||||||| ||  ||||| ||||||||||||||||| |||||||||||    
T  22945441 gaactacgccgagacatgaaagctctccatgaaaaagggaaatttgggaagactgcgtacgatctctg 22945508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 12379689 - 12379773
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||| ||||| |  |||||| ||||||| |||||||  ||||| ||||||||||||||||| |||||||||||    
T  12379689 tacgagaaaagtatgacgaactacgccgagacatgaaagccctccgtgaaaaagggaaatttgggaagactgcgtacgatctctg 12379773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 152 - 319
Target Start/End: Original strand, 25109 - 25276
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcctatgatggaatgagtaacttacgagaaaagtatgat 251  Q
    ||||||||| ||||| ||||| |||| |||||| || ||||| |||||||||||    ||||| || || | | | ||  || |||||||||||||||||    
T  25109 acctgtgatacatacaattccgcaaactgaagagcctatctttcattcagggaatgcagaggcttacgaggaagtaagcgacctacgagaaaagtatgat 25208  T
Q  252 gaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    ||||| |  |||||| |||||||||||| ||  ||||| ||||||||||||||||| |||||||||||    
T  25209 gaactacgccgagacatgaaagctctccatgaaaaagggaaatttgggaagactgcgtacgatctctg 25276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 39585 - 39522
Alignment:
Q  152 acctgtgatgcataccattccacaaaatgaagaacccatcttccattcagggaacatggaggcc 215  Q
    ||||||||||||||| |||||||||| ||||||||| || |||||||||||||| |||||||||    
T  39585 acctgtgatgcatactattccacaaagtgaagaaccaattttccattcagggaatatggaggcc 39522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 39469 - 39418
Alignment:
Q  268 tgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctg 319  Q
    |||||||||||||||||||||  || ||||||||||| || |||||||||||    
T  39469 tgaaagctctccgtgggaaagagaagtttgggaagaccgcctacgatctctg 39418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 9006 - 9092
Alignment:
Q  235 tacgagaaaagtatgatgaactgcaacgagacgtgaaagctctccgtgggaaaggaaaatttgggaagactgcttacgatctctgct 321  Q
    ||||||| |||||||||||||| |  |||||| ||||||| |||| ||  ||||| ||||| ||||||||||| |||||||||||||    
T  9006 tacgagagaagtatgatgaactacgccgagacatgaaagccctccatgaaaaagggaaattcgggaagactgcgtacgatctctgct 9092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 762 times since January 2019
Visitors: 3656