View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_26 (Length: 383)
Name: NF0549_low_26
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_26 |
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| [»] scaffold0927 (2 HSPs) |
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| [»] scaffold1653 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: scaffold0927 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 1365 - 1570
Alignment:
| Q |
30 |
gcttgaaacctagctcttctaggatgtttgctcctatattagaatatgaaatctaaacattctaggatatgtggttggcaagcgtggtaatatgaattta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1365 |
gcttgaaacctagctcttctaggatgtttgctcctatattagaatatgaaatctaaacattctaggatatgtggttggcaagcgtggtaatatgaattta |
1464 |
T |
|
| Q |
130 |
tgatgattagttatttctttatgtttttcaggaaaatgattcattcatgaagttaaagttattaacaggtttggtttatttaaacaccaggagctgtgtg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1465 |
tgatgattagttatttctttatgtttttcaggaaaatgattcattcatgaagttaaagttattaacaagtttggtttatttaaacaccaggagctgtgtg |
1564 |
T |
|
| Q |
230 |
cttaga |
235 |
Q |
| |
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|||||| |
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|
| T |
1565 |
cttaga |
1570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 2577 - 2715
Alignment:
| Q |
232 |
tagagcagttactaatcctgatagagagctagcaagctctctgtggcaacatttcatgacccagcaaagacagtcaaaacctaccttttttatgaactaa |
331 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2577 |
tagagcaattactaatcctgatagagagctagcaagctctctgtggcaacatttcatgacccagcaaagacagtcaaaacctaccttttttatgaactaa |
2676 |
T |
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| Q |
332 |
tcaatgattcatcacaagctaaatactggggtgttgtct |
370 |
Q |
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| T |
2677 |
tcaatgattcatcacaagctaaatactggggtgttgtct |
2715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 217 - 368
Target Start/End: Complemental strand, 28589698 - 28589552
Alignment:
| Q |
217 |
caggagctgtgtgcttagagcagttactaatcctgatagagagctagcaagctctctgtggcaacatttcatgacccagcaaagacagtcaaaacctacc |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||||| | || || |
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| T |
28589698 |
caggagctgtgtgcatagagcagttactaatcctgatagag--caag---gctctctgtggcaacatttcatgacccagccaagacagtcaagatcttcc |
28589604 |
T |
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| Q |
317 |
ttttttatgaactaatcaatgattcatcacaagctaaatactggggtgttgt |
368 |
Q |
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| ||| ||||||||| ||||||||||||| || |||||| |||||||||| |
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| T |
28589603 |
ctgtttctgaactaataaatgattcatcaccggcaaaataccggggtgttgt |
28589552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 368
Target Start/End: Complemental strand, 28578795 - 28578694
Alignment:
| Q |
267 |
gctctctgtggcaacatttcatgacccagcaaagacagtcaaaacctaccttttttatgaactaatcaatgattcatcacaagctaaatactggggtgtt |
366 |
Q |
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||||||||| |||||||||||||||||||| ||||||| |||||||| ||| ||| ||||||| ||||||||||||||| |||||||| | ||||||| |
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| T |
28578795 |
gctctctgtagcaacatttcatgacccagccaagacagacaaaacctcgcttgtttctgaactattcaatgattcatcaccagctaaattccagggtgtt |
28578696 |
T |
|
| Q |
367 |
gt |
368 |
Q |
| |
|
|| |
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|
| T |
28578695 |
gt |
28578694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 28564520 - 28564485
Alignment:
| Q |
222 |
gctgtgtgcttagagcagttactaatcctgatagag |
257 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
28564520 |
gctgtgtgcatagagcagttactaatcctgatagag |
28564485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1653 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1653
Description:
Target: scaffold1653; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 368
Target Start/End: Complemental strand, 1393 - 1291
Alignment:
| Q |
267 |
gctctctgtggcaacatttcatga-cccagcaaagacagtcaaaacctaccttttttatgaactaatcaatgattcatcacaagctaaatactggggtgt |
365 |
Q |
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|||||||||||||||| ||||| | ||||| ||||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||| |||||| |
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| T |
1393 |
gctctctgtggcaacacttcatcaacccagttaagacagtcaaaaccacccttgtttctgaactaatcaatgattcatcaccagctaaataccagggtgt |
1294 |
T |
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| Q |
366 |
tgt |
368 |
Q |
| |
|
||| |
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| T |
1293 |
tgt |
1291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 1325 - 1430
Alignment:
| Q |
236 |
gcagttactaatcctgatagagagctagcaag-ctctctgtggcaacatttcatgacccagcaaagacagtcaaaacctaccttttttatgaactaatca |
334 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||| ||||||||||| | | || | ||| ||||||||||| |
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| T |
1325 |
gcagttactaatcctgatagag------caagactctctatggcaacatttcatgatccagccaagacagtcaagatttcccctgtttctgaactaatca |
1418 |
T |
|
| Q |
335 |
atgattcatcac |
346 |
Q |
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|||||||||||| |
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| T |
1419 |
atgattcatcac |
1430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 346
Target Start/End: Original strand, 1325 - 1430
Alignment:
| Q |
236 |
gcagttactaatcctgatagagagctagcaag-ctctctgtggcaacatttcatgacccagcaaagacagtcaaaacctaccttttttatgaactaatca |
334 |
Q |
| |
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|||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||| ||||||||||| | | || | ||| ||||||||||| |
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|
| T |
1325 |
gcagttactaatcctgatagag------caagactctctatggcaacatttcatgatccagccaagacagtcaagatttcccctgtttctgaactaatca |
1418 |
T |
|
| Q |
335 |
atgattcatcac |
346 |
Q |
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|
|||||||||||| |
|
|
| T |
1419 |
atgattcatcac |
1430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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