View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_27 (Length: 372)
Name: NF0549_low_27
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 41900779 - 41900632
Alignment:
| Q |
1 |
cacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaa |
100 |
Q |
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| T |
41900779 |
cacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaa |
41900680 |
T |
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| Q |
101 |
aacactcacacctctaccccaaattagctccattatatacatacaaat |
148 |
Q |
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| T |
41900679 |
aacacgcacacctctaccccaaattagctccattatatacatacaaat |
41900632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 41900887 - 41900740
Alignment:
| Q |
1 |
cacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41900887 |
cacctctaccccaaattaactcaattatatacatacaaatccccaccacctccaaagtatgcaaaatatccacaatcacaatataccccacatcatgcaa |
41900788 |
T |
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| Q |
101 |
aacactcacacctctaccccaaattagctccattatatacatacaaat |
148 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
41900787 |
aacactcacacctctaccccaaattaactccattatatacatataaat |
41900740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 41900983 - 41900848
Alignment:
| Q |
13 |
aaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaaaacactcacacc |
112 |
Q |
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| T |
41900983 |
aaattaactccaatatatacatacaaatccccaccacctccaaagtatgcaaaatatccacaatcaaaatacacctcacatcatgcaaaacactcacacc |
41900884 |
T |
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| Q |
113 |
tctaccccaaattagctccattatatacatacaaat |
148 |
Q |
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|||||||||||||| ||| ||||||||||||||||| |
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| T |
41900883 |
tctaccccaaattaactcaattatatacatacaaat |
41900848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 41901202 - 41901064
Alignment:
| Q |
10 |
cccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaaaacactcac |
109 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| | ||||||||||||||||||| | |||||||||||||||| | |
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| T |
41901202 |
cccaaattaactccattatatgcatataaatctccaccacctccaaaatatgcaaaacacccacaatcacaatacaccctatatcatgcaaaacactcgc |
41901103 |
T |
|
| Q |
110 |
acctctaccccaaattagctccattatatacatacaaat |
148 |
Q |
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|||||||||| |||||| |||||||||||| | |||||| |
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| T |
41901102 |
acctctaccctaaattaactccattatataaacacaaat |
41901064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 41900515 - 41900437
Alignment:
| Q |
265 |
tcaccacaacctaagcatgtctataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaagtccc |
343 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41900515 |
tcaccacaacctaagtatgtctataagtctcctcctccaccatctgcatcactacccctttcttacatctacaagtccc |
41900437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 41901103 - 41900956
Alignment:
| Q |
1 |
cacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaa |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | | ||||||||| ||| |||| |||| | |||||||||||||| | |||||||| | ||||||| |
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| T |
41901103 |
cacctctaccctaaattaactccattatataaacacaaatctccattacctacaaagcatgtagaatatccacaatcaaagtacacccctgaacatgcaa |
41901004 |
T |
|
| Q |
101 |
aacactcacacctctaccccaaattagctccattatatacatacaaat |
148 |
Q |
| |
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|||| ||||| | ||| || |||||| ||||| ||||||||||||||| |
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|
| T |
41901003 |
aacattcacatccctatccaaaattaactccaatatatacatacaaat |
41900956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 41900307 - 41900245
Alignment:
| Q |
281 |
atgtctataagtctcctcctccaccatctgcaaaactacccctttcttacatctacaagtccc |
343 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41900307 |
atgtctacaagtctcctcctccaccatctgcatcactacccctttcttacatctacaagtccc |
41900245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 41901308 - 41901172
Alignment:
| Q |
12 |
caaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaatcacaatacaccccacatcatgcaaaacactcacac |
111 |
Q |
| |
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||||||||||||||| |||| | | |||||||||| || | || |||||| |||||||||||||| | ||||||||| | ||||||||||| ||||| |
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| T |
41901308 |
caaattaactccattgtataaacacaaatctccactctctacgaagcatgcagaatatccacaatcaaagtacaccccaaaacatgcaaaacattcacat |
41901209 |
T |
|
| Q |
112 |
ctctaccccaaattagctccattatatacatacaaat |
148 |
Q |
| |
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| ||| ||||||||| ||||||||||| |||| |||| |
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|
| T |
41901208 |
ccctatcccaaattaactccattatatgcatataaat |
41901172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41900671 - 41900625
Alignment:
| Q |
1 |
cacctctaccccaaattaactccattatatacatataaatctccacc |
47 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
41900671 |
cacctctaccccaaattagctccattatatacatacaaatctccacc |
41900625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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