View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_3 (Length: 715)
Name: NF0549_low_3
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 84 - 370
Target Start/End: Original strand, 45364117 - 45364417
Alignment:
| Q |
84 |
taattgaacataattacatatgttggtgtcagtatcaaacacaaatatgtgtcaccagtatggcgagttcggtgtgtgacacatattggggattacaatt |
183 |
Q |
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| T |
45364117 |
taattgaacataattacatatgttggtgtcagtatcaaacacaaatatgtgtcaccagtatgacaagttcggtgtgtgacacatattggggattacaatt |
45364216 |
T |
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| Q |
184 |
aaaatcatccatatagaaaatgc--nnnnnnnntaaagagatctagatcaactataattcaactccaatgaacaa------------acacatgatccct |
269 |
Q |
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| T |
45364217 |
aaaatcatccatatagaaaatgcaaaaaaataataaagagatctagatcaactataattcaactccaatgaacaaacacaatcagacacacatgatccct |
45364316 |
T |
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| Q |
270 |
aaatttacacgatatcttcaacaaaatttactcaaaaggaactatgtaaggcaattagacataccattaggaatatccttaagttgagtaccacgtccct |
369 |
Q |
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| T |
45364317 |
aaattcacacgatatcttcaacaaaatttactcaaaaggaactatgtaaggcaattagacataccattaggaatatccttaagctgagtaccacgtccct |
45364416 |
T |
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| Q |
370 |
g |
370 |
Q |
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| T |
45364417 |
g |
45364417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 449 - 704
Target Start/End: Original strand, 45364498 - 45364745
Alignment:
| Q |
449 |
taccttttcaattatcagtcctttactggaagaagaccttccaaacttcgaaggtgaaggttcagagtatcgctccaccgttttcctttccctagttggc |
548 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45364498 |
taccttttcaattatcagtcctttactggaagaagaccttccaaacttcgaaggtgaaggttcagagtaccgctccaccgttttcctttccctagttggc |
45364597 |
T |
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| Q |
549 |
ctatcactcgtcggagtaaccggactcttcttctccgacgactctttcttcacacccttcatctcactcgaccagcatcttcctcctcctcatcatcagc |
648 |
Q |
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| T |
45364598 |
ctatcactcgtcggagtaaccggactcttcttctccgacgactctttcttcacacccttcttctc-ctc-accagcatcttcctcctcatcatcatc--- |
45364692 |
T |
|
| Q |
649 |
atcagcatcgtcttcgtctccaccttcatcttcatcatctttgtcggaatcttcat |
704 |
Q |
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| T |
45364693 |
---agcatcgtcttcgtctccaccttcatcttcatcatctttgtcggaatcttcat |
45364745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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