View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_30 (Length: 371)
Name: NF0549_low_30
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 65 - 297
Target Start/End: Original strand, 8909785 - 8910017
Alignment:
| Q |
65 |
acttatgcttttttgagaagaaattatgaaacagatatgtgatcatgagttagggaaaccaccatgaaaggttgattatctgatctgaatataatgttgg |
164 |
Q |
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| T |
8909785 |
acttatgcttttttgagaagaaattataaaacagatatgtgatcatgagttagggaaaccaccatgaaaggttgattatctgatctgaatataatgttgg |
8909884 |
T |
|
| Q |
165 |
gaatttctcttagccatattggtaattctctgaaaagtaaccaataaaacgagattaaggaaagatttgtggtaagnnnnnnnnnnnnnttggtagacaa |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8909885 |
gaatttctcttagccatattggtaattctctgaaaagtaaccaataaaacgagattaaggaaagatttgtggtaagaaaaaaataaaaattggtagacaa |
8909984 |
T |
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| Q |
265 |
atgtcagcatattaattgttatgttagtatctt |
297 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
8909985 |
atgtcagcatattaattgttatgttagtatctt |
8910017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 292 - 361
Target Start/End: Original strand, 22443114 - 22443183
Alignment:
| Q |
292 |
tatcttatttgttagaaacctttgggttgtgcagagagagattcatctcttctctaaggagcaacagcta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22443114 |
tatcttatttgttagaaacctttgggttgtgcagagagagattcatctcttctctaaggagcaatagcta |
22443183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 42328295 - 42328259
Alignment:
| Q |
263 |
aaatgtcagcatattaattgttatgttagtatcttat |
299 |
Q |
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|||||| ||||||||||||||||||||||||| |||| |
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| T |
42328295 |
aaatgttagcatattaattgttatgttagtattttat |
42328259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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