View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_31 (Length: 368)

Name: NF0549_low_31
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_31
NF0549_low_31
[»] chr2 (4 HSPs)
chr2 (1-239)||(40894564-40894802)
chr2 (101-238)||(31621831-31621970)
chr2 (101-237)||(36668882-36669020)
chr2 (324-360)||(40894443-40894479)
[»] chr3 (2 HSPs)
chr3 (1-239)||(37464683-37464919)
chr3 (101-184)||(19801947-19802030)
[»] scaffold0115 (2 HSPs)
scaffold0115 (101-238)||(4532-4671)
scaffold0115 (101-238)||(12272-12411)
[»] chr5 (1 HSPs)
chr5 (102-238)||(16728009-16728147)
[»] chr1 (4 HSPs)
chr1 (104-238)||(49917586-49917722)
chr1 (101-239)||(26529703-26529843)
chr1 (101-238)||(36574158-36574297)
chr1 (71-184)||(17332769-17332879)
[»] chr4 (2 HSPs)
chr4 (101-238)||(8479848-8479989)
chr4 (101-178)||(31409538-31409614)
[»] chr7 (1 HSPs)
chr7 (1-60)||(42537846-42537905)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40894802 - 40894564
Alignment:
Q  1 gttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatggatgtccatgtaggcga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40894802 gttaactatgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatggatgtccatgtaggcga 40894703  T
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactcaaactcatattctccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  40894702 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaatttcttcttcttctccaaaacaactcaaactcatattctccaa 40894603  T
Q  201 catctttacccataatttttcatatttatacagataact 239  Q
     |||| |||||| ||||||||||||||||||||||||||    
T  40894602 tatctctacccagaatttttcatatttatacagataact 40894564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 31621970 - 31621831
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 198  Q
    |||||||||||||||||| |||||||||  |  ||||||||||||||||||||| |||| |||||||||||||||||||||||  |||| ||| || |||    
T  31621970 gagggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaacacattttgtcc 31621871  T
Q  199 aacatctttacccataatttttcatatttatacagataac 238  Q
    ||||||| | |||||||||||||||||| ||||| |||||    
T  31621870 aacatctctgcccataatttttcatattcatacaaataac 31621831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 36669020 - 36668882
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 198  Q
    |||||||||||||||||| |||||||||  |  ||||||||||||||||||||| |||| |||||||||||||||||||||||  ||||||||  | |||    
T  36669020 gagggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaactcattctgtcc 36668921  T
Q  199 aacatctttacccataatttttcatatttatacagataa 237  Q
    ||||| | | |||||||||||||||||| ||||| ||||    
T  36668920 aacatttctgcccataatttttcatattcatacaaataa 36668882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 360
Target Start/End: Complemental strand, 40894479 - 40894443
Alignment:
Q  324 tgaattgatttatcatctttatttacatcttcatctc 360  Q
    |||||||||||||||||||||||| ||||||||||||    
T  40894479 tgaattgatttatcatctttattttcatcttcatctc 40894443  T

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Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37464919 - 37464683
Alignment:
Q  1 gttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccacgtaggcaaatgactaaattgatggatgtccatgtaggcga 100  Q
    ||||| |||| | ||||||| |||||||||||||||||||||||||||||||| ||||||  | ||||| ||||||||||||||||||||||||||||||    
T  37464919 gttaattgtgttgatctggctgctagacttgccacttcagttgctgtattggcattccacacatgcaaa-gactaaattgatggatgtccatgtaggcga 37464821  T
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 198  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||||||| ||| ||||||||   ||||||||||||||||  |||||||||||||||    
T  37464820 gagggaccaaactgaccataattatgttactgtcttcatcttctccaacacatctcattccttc---ttctccaacacaactcataaactcatattctcc 37464724  T
Q  199 aacatctttacccataatttttcatatttatacagataact 239  Q
    ||||||| |||||| ||||||||||||| ||| ||||||||    
T  37464723 aacatctctacccagaatttttcatattcatagagataact 37464683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 184
Target Start/End: Original strand, 19801947 - 19802030
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactca 184  Q
    |||||||||||||||||| ||||||||| || |||||| ||||| |||  || | ||||||||| ||||||||| ||| |||||    
T  19801947 gagggaccaaaatgaccacaattatgtttctgccttcaacttcttcaatgcccccaattccttcatcttctccatcactactca 19802030  T

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Target: scaffold0115 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 4532 - 4671
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaact--caaactcatattctcc 198  Q
    ||||||||||||||| || |||||||||  | |||||||||||||||| || || |||||||||||||||||||||||||||  ||||||||| || |||    
T  4532 gagggaccaaaatgatcagaattatgttcatgccttcatcttctccaaaacttccaattccttcttcttctccaacacaactaacaaactcattttgtcc 4631  T
Q  199 aacatctttacccataatttttcatatttatacagataac 238  Q
    ||||||||| ||||||| |||||||||| ||||| |||||    
T  4632 aacatctttgcccataaattttcatattcatacaaataac 4671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 12272 - 12411
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaact--caaactcatattctcc 198  Q
    ||||||||||||||| || |||||||||  | |||||||||||||||| || || |||||||||||||||||||||||||||  ||||||||| || |||    
T  12272 gagggaccaaaatgatcagaattatgttcatgccttcatcttctccaaaacttccaattccttcttcttctccaacacaactaacaaactcattttgtcc 12371  T
Q  199 aacatctttacccataatttttcatatttatacagataac 238  Q
    ||||||||| ||||||| |||||||||| ||||| |||||    
T  12372 aacatctttgcccataaattttcatattcatacaaataac 12411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 16728009 - 16728147
Alignment:
Q  102 agggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcca 199  Q
    ||||||||||||||||| |||||||||  |  ||||||||||||||||||||| |||| |||||||||||||||||||||||  |||||||| || ||||    
T  16728009 agggaccaaaatgaccagaattatgttcttgtcttcatcttctccaacacctccaattacttcttcttctccaacacaactcataaactcattttgtcca 16728108  T
Q  200 acatctttacccataatttttcatatttatacagataac 238  Q
    |||||| | || | ||||||||||||| ||||| |||||    
T  16728109 acatctctgcctagaatttttcatattcatacaaataac 16728147  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 49917586 - 49917722
Alignment:
Q  104 ggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctccaac 201  Q
    ||||||||||||||| |||||||||  | ||| ||||||||| |||||||| ||||||||||||||||||||||||||||  |||||||| || ||||||    
T  49917586 ggaccaaaatgaccagaattatgttcttgcctccatcttctcaaacacctccaattccttcttcttctccaacacaactcataaactcattttatccaac 49917685  T
Q  202 atctttacccataatttttcatatttatacagataac 238  Q
    |||| | |||| || |||||||||| ||||| |||||    
T  49917686 atctctgcccagaaattttcatattcatacaaataac 49917722  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 26529703 - 26529843
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 198  Q
    |||||||||||||||||| |||||||||  |  ||||||| ||||||||||||| |||| ||||||||||||||| |||||||  ||||||||  | |||    
T  26529703 gagggaccaaaatgaccagaattatgttcttgtcttcatcatctccaacacctccaattacttcttcttctccaaaacaactcataaactcattctgtcc 26529802  T
Q  199 aacatctttacccataatttttcatatttatacagataact 239  Q
    ||||||| |  ||||||||||||||||| ||||| ||||||    
T  26529803 aacatctatgtccataatttttcatattcatacaaataact 26529843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 36574158 - 36574297
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactcatattctcc 198  Q
    |||||||||||||||||| |||||||||  |   |||||||||||||||||||| |||| |||| ||||||||||||||||||  |||||||| || | |    
T  36574158 gagggaccaaaatgaccaaaattatgttcttgttttcatcttctccaacacctccaattacttcatcttctccaacacaactcataaactcattttgtac 36574257  T
Q  199 aacatctttacccataatttttcatatttatacagataac 238  Q
    ||||||| | |||| ||||||||||||| ||||| |||||    
T  36574258 aacatctctgcccagaatttttcatattcatacaaataac 36574297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 17332879 - 17332769
Alignment:
Q  71 gactaaattgatggatgtccatgtaggcgagagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttc 170  Q
    |||||||||| | | |||| |||||||||||  |||||||||| |||| |||||| ||||  ||||| |||||||||||||||| |||||  |  |||||    
T  17332879 gactaaattgtttggtgtcaatgtaggcgag--ggaccaaaattaccacaattat-ttacggccttcttcttctccaacacctccaattctattatcttc 17332783  T
Q  171 tccaacacaactca 184  Q
    |||||||| |||||    
T  17332782 tccaacactactca 17332769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 8479848 - 8479989
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacacaactc--aaactca-tattctc 197  Q
    ||||||||||||||| || ||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||  ||||||| | || ||    
T  8479848 gagggaccaaaatgatcagaattatgttcctgccttcatcttctccaacacttccaattccttcttcttctccaacacaactcagaaactcatttttgtc 8479947  T
Q  198 caacatctttaccc-ataatttttcatatttatacagataac 238  Q
    |||||||||| ||| | || |||||||||| ||||| |||||    
T  8479948 caacatctttgcccaaaaaattttcatattcatacaaataac 8479989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 31409538 - 31409614
Alignment:
Q  101 gagggaccaaaatgaccataattatgttactaccttcatcttctccaacacctctaattccttcttcttctccaacac 178  Q
    |||||| ||||||||||| ||||||||| || |||||||||||| |||  |||| ||||||||| |||||||||||||    
T  31409538 gagggatcaaaatgaccacaattatgtt-ctgccttcatcttcttcaatgcctccaattccttcatcttctccaacac 31409614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42537846 - 42537905
Alignment:
Q  1 gttaactgtgctaatctggccgctagacttgccacttcagttgctgtattggccttccac 60  Q
    ||||| |||| | ||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  42537846 gttaattgtgttgatctggctgctagacttgccacttcagctgctgtattggcattccac 42537905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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