View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_36 (Length: 343)
Name: NF0549_low_36
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 97 - 271
Target Start/End: Complemental strand, 4695817 - 4695647
Alignment:
| Q |
97 |
tttatagagtagcatcaagacgaacatgttccgcttttccattacacttcattatagatttattttattgtacatggttatataatatatttattataaa |
196 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4695817 |
tttatagagtagcatcaagacggacatgttccgcttttccattacacttcattatagatttattttattgtacatggttatataata----tattataaa |
4695722 |
T |
|
| Q |
197 |
agggtaagtcatcacctccctttctcttctaaatcctcaaaccatatactttaatatttattttcctatgctact |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4695721 |
agggtaagtcatcacctccctttctcttctaaatcgtcaaaccatatactttaatatttattttcctatgatact |
4695647 |
T |
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