View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_41 (Length: 329)
Name: NF0549_low_41
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 6090286 - 6090115
Alignment:
| Q |
7 |
tccaacaatatctgcaaaacacacagaacaaagatataaccggctataaccggtaactatccggtcactagaaaccctactatgtctacactttcatcct |
106 |
Q |
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| T |
6090286 |
tccaaaaatatctgcaaaacacacagaataaagatatcaccggctataaccggtaactatccggtcactagaaaccctactatgtctacactttcatcct |
6090187 |
T |
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| Q |
107 |
ttcatagttcacactttgttttgtttccttgttccaaagaaacaataatctgaactctttgttcagactctc |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6090186 |
ttcatagttcacactttgttttgtttccttgttccaaagaaacaataatctgaactctttgttcagactctc |
6090115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 301
Target Start/End: Complemental strand, 6090086 - 6089992
Alignment:
| Q |
207 |
catcatcaaattctcaatcactttgacgtatcaaattttttctgtcatcataataataaacttaacatcaccattaattattataccttctttct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6090086 |
catcatcaaattctcaatcactttgacgtatcaaatttttgctgtcatcataataataaacttaacatcaccattaattattataccttctttct |
6089992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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