View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_46 (Length: 318)

Name: NF0549_low_46
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_46
NF0549_low_46
[»] chr3 (1 HSPs)
chr3 (97-294)||(47455969-47456166)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 47456166 - 47455969
Alignment:
Q  97 catctatacttgtattggcttcttctgccttgttctcatttctattaaccttcttgctcttcttggactctgcattatttacgtatctttgcacctgaat 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47456166 catctatacttgtattggcttcttctgccttgttctcatttctattaaccttcttgctcttcttggactctgcattatttacgtatctttgcacctgaat 47456067  T
Q  197 ttcgaaaccacgagcacaaaccgttacaaactcacaaaatgtcaaattattgttattaattattaaagtgacactaataatcattttatattcatctc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47456066 ttcgaaaccacgagcacaaaccgttacaaactcacaaaatgtcaaattattgttattaattattaaagtgacactaataatcattttatatccatctc 47455969  T

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