View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_47 (Length: 318)
Name: NF0549_low_47
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 41753908 - 41753649
Alignment:
| Q |
30 |
acattagacctctacaacgctttcctctctataattaaaactttgcagaaaaagcgcgatggtatgttcttttgaacattttttcttcttataagcatgg |
129 |
Q |
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| T |
41753908 |
acattagacctctataacgctttcctctctataattaaaactttgcagaaaaagcgcgatggtacgttcttttgaaccttttttcttcttataagcatgg |
41753809 |
T |
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| Q |
130 |
tgtgtgtatatatatag---tagaaaaagttgaaataataaataaaatttaatgatctgactactattgtctcgtaatttttgtagtaaagttgagcata |
226 |
Q |
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| T |
41753808 |
tatatatatatatatatatatagaaaaagttgaaataataacaaaaatttaatgatctgacta---ttgtctcgtaatttttgtagtaaagttgagcata |
41753712 |
T |
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| Q |
227 |
tgattgattgtgattcgttaaaaatgtaattgtaaattgatgatggcttactttttctctctg |
289 |
Q |
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| T |
41753711 |
cgattgattgtgatttgttaaaaatgtaattgtaaattgatgatggcttactttttctctctg |
41753649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 113
Target Start/End: Complemental strand, 41758156 - 41758077
Alignment:
| Q |
34 |
tagacctctacaacgctttcctctctataattaaaactttgcagaaaaagcgcgatggtatgttcttttgaacatttttt |
113 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||| | |||||| |
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| T |
41758156 |
tagacctctacaatgctttcctctctacaattaaaactatgcagaaaaagcatgatggtatgtccttttgatcttttttt |
41758077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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