View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_48 (Length: 318)
Name: NF0549_low_48
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 4e-75; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 65 - 222
Target Start/End: Complemental strand, 39458200 - 39458042
Alignment:
| Q |
65 |
cagagaatggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcac |
164 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39458200 |
cagaaaatggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcac |
39458101 |
T |
|
| Q |
165 |
ttccggtgttgctttccttggtttg-aatcttcatattcataatatgtttgaacgagac |
222 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39458100 |
ttccggtgttgctttccttggtttgaaatcttcatattcataatatgtttgaacgagac |
39458042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 92 - 205
Target Start/End: Original strand, 39451296 - 39451409
Alignment:
| Q |
92 |
ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa |
191 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||| || |||| |||||||||||||||||| || ||||||| |||||||||||| |
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| T |
39451296 |
ttgttgacatgttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttcccttggtttgaa |
39451395 |
T |
|
| Q |
192 |
tcttcatattcata |
205 |
Q |
| |
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|||||||||||||| |
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| T |
39451396 |
tcttcatattcata |
39451409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 92 - 222
Target Start/End: Complemental strand, 39464434 - 39464304
Alignment:
| Q |
92 |
ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa |
191 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| || ||||||| |||||| || | || ||||||||||| |||||||||||||||||||||| |
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| T |
39464434 |
ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttgaa |
39464335 |
T |
|
| Q |
192 |
tcttcatattcataatatgtttgaacgagac |
222 |
Q |
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|||||||||||| | | |||||||||||||| |
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| T |
39464334 |
tcttcatattcacactttgtttgaacgagac |
39464304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 39486761 - 39486891
Alignment:
| Q |
92 |
ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
39486761 |
ttgttgacatgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttgat |
39486860 |
T |
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| Q |
192 |
tcttcatattcataatatgtttgaacgagac |
222 |
Q |
| |
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|| ||| |||| | | |||||||||||||| |
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| T |
39486861 |
gctccatcttcacactctgtttgaacgagac |
39486891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 39472299 - 39472424
Alignment:
| Q |
65 |
cagagaatggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcac |
164 |
Q |
| |
|
|||| ||||||||||| || || || ||||||||||||||||||| | |||||||||||||| ||||| || | |||||||||||| ||||||||||| |
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| T |
39472299 |
cagaaaatggagtccttgccgcttttgttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcac |
39472398 |
T |
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| Q |
165 |
ttccggtgttgctttccttggtttga |
190 |
Q |
| |
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|||||||||||| |||||||| |||| |
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| T |
39472399 |
ttccggtgttgcgttccttggattga |
39472424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 82 - 203
Target Start/End: Complemental strand, 43312423 - 43312302
Alignment:
| Q |
82 |
gctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttcc |
181 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||| | || || ||| ||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
43312423 |
gctgccttcgttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttcc |
43312324 |
T |
|
| Q |
182 |
ttggtttgaatcttcatattca |
203 |
Q |
| |
|
||||||||| |||||| |||| |
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| T |
43312323 |
ttggtttgatgcttcattttca |
43312302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 39460543 - 39460651
Alignment:
| Q |
92 |
ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa |
191 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| || |
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| T |
39460543 |
ttgttgacatgttctgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggttcaaa |
39460642 |
T |
|
| Q |
192 |
tcttcatat |
200 |
Q |
| |
|
||||||||| |
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|
| T |
39460643 |
tcttcatat |
39460651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 217
Target Start/End: Original strand, 39454909 - 39455054
Alignment:
| Q |
72 |
tggagtcctagctgcattcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggt |
171 |
Q |
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||||||||| || || ||| |||||||||||| |||||| ||||||||||||||| ||||| || | ||||||| |||||||||||||||||| || |
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| T |
39454909 |
tggagtcctcgcagctttcgttgttgacatgtcctgcacagccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagt |
39455008 |
T |
|
| Q |
172 |
gttgctttccttggtttgaatcttcatattcataatatgtttgaac |
217 |
Q |
| |
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|| |||||||||||||||| ||| || |||| ||||||||||||| |
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| T |
39455009 |
gtagctttccttggtttgactctctatcttcacaatatgtttgaac |
39455054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 222
Target Start/End: Complemental strand, 39470639 - 39470506
Alignment:
| Q |
89 |
tcattgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggttt |
188 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| |||||||||| ||||| || | || || ||||||||||| |||||||||||||||| |
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| T |
39470639 |
tcattgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttccggcattgctttccttggttt |
39470540 |
T |
|
| Q |
189 |
gaatcttcatattcataatatgtttgaacgagac |
222 |
Q |
| |
|
|||||| ||||||| || |||||||||||||| |
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|
| T |
39470539 |
gaatctctatattcaatatctgtttgaacgagac |
39470506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 39475802 - 39475905
Alignment:
| Q |
92 |
ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || || || ||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
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|
| T |
39475802 |
ttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttggtttgaa |
39475901 |
T |
|
| Q |
192 |
tctt |
195 |
Q |
| |
|
|||| |
|
|
| T |
39475902 |
tctt |
39475905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 39483553 - 39483656
Alignment:
| Q |
92 |
ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttttgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || || ||||||||||||||| |||| ||||| | ||||||||| |||||||||||| |
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|
| T |
39483553 |
ttgttgacatgttctgcaccaccatgattgatgttgccaatgagttcaatgtccctacgctcgttttctacactttcagtgttgcttcccttggtttgaa |
39483652 |
T |
|
| Q |
192 |
tctt |
195 |
Q |
| |
|
|||| |
|
|
| T |
39483653 |
tctt |
39483656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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