View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_50 (Length: 315)
Name: NF0549_low_50
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 8642679 - 8642953
Alignment:
| Q |
10 |
aataatattgatagaaacataagactgcaaaaggattcatctaannnnnnnnnnnnggataaatcaagatgtttttcacacgtatttgtgaagactaatt |
109 |
Q |
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| T |
8642679 |
aataatattgatagaaacataagactgcaaaaggattcatctaatttttttt----gggtaaatcaagatgtttttcacacatatttctgaagactaatt |
8642774 |
T |
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| Q |
110 |
tcttgaaataattgagattcattttaattgaaatattttaaaacacattgttttagacacagtcacgtaattaagaattcgtgttggtatgcggtatagg |
209 |
Q |
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| T |
8642775 |
tcttgaagtaattgagattcattttaattgaaatattttaaaacacattgttttagacacagtcacgtaattaacaattcatgttggtatgcggtatagg |
8642874 |
T |
|
| Q |
210 |
tttgcggtacgcgacatgagacgaattcttatcatcttagcgatgtgtctaaaacatatttaaggaacccaactatttg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
8642875 |
tttgcggtacgcgacatgagacgaattcttatcatcttagcgatgtgtctaaaacatatttaaagaatccaactatttg |
8642953 |
T |
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