View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_55 (Length: 302)

Name: NF0549_low_55
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_55
NF0549_low_55
[»] chr3 (2 HSPs)
chr3 (60-235)||(26373552-26373728)
chr3 (77-126)||(28541701-28541750)
[»] scaffold0042 (1 HSPs)
scaffold0042 (60-235)||(30879-31055)
[»] chr2 (1 HSPs)
chr2 (60-166)||(44742001-44742107)
[»] chr1 (1 HSPs)
chr1 (65-167)||(14635958-14636057)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 26373552 - 26373728
Alignment:
Q  60 agcacagaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaa 159  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26373552 agcacagaccaccaacacaaccagtttcagacgtgtctgaacccagattatgggatgagtccaacacacgttagtaaccaaacagcccttacgggtttaa 26373651  T
Q  160 agaaccaattcctttcgggtttgcgaaacagaa-catcaaaacaggtcacaactgttaccatgccctccaatctctg 235  Q
    |||||||   ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  26373652 agaaccataccctttcgggtttgcgaaacagaaccaccaaaacaggtcacaactgttaccatgccctccaatctctg 26373728  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 28541701 - 28541750
Alignment:
Q  77 caaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacac 126  Q
    ||||||||||||||||||| |||||||| |||  ||||||||| ||||||    
T  28541701 caaccagtttcagacgtgtttgaacccatatcgagggatgagttcaacac 28541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 31055 - 30879
Alignment:
Q  60 agcacagaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaa 159  Q
    |||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||  |||||||    
T  31055 agcacaaaccaccaacacaaccagtttcagacgtgtctgaactcagatcatgggatgagtctaacacacgttagtaaccaaacaacccttataggtttaa 30956  T
Q  160 agaaccaattcctttcgggtttgcgaaacagaa-catcaaaacaggtcacaactgttaccatgccctccaatctctg 235  Q
    |||||||   |||||||||||||||||||| || || ||||||| ||||||| |||||||||| |||||||||||||    
T  30955 agaaccataccctttcgggtttgcgaaacaaaaccaccaaaacatgtcacaattgttaccatgtcctccaatctctg 30879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 44742107 - 44742001
Alignment:
Q  60 agcacagaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaa 159  Q
    ||||| ||||| |||||||| | ||| |||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  44742107 agcacggaccaccaacacaaacggttccagacgcgcttgaacccagatcaagggatgagtccaacacacgttagtaaccaaacagcccttacgggttaaa 44742008  T
Q  160 agaacca 166  Q
    |||||||    
T  44742007 agaacca 44742001  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 167
Target Start/End: Original strand, 14635958 - 14636057
Alignment:
Q  65 agaccatcaacacaaccagtttcagacgtgtctgaacccagatcatgggatgagtccaacacacgttagtaaccaaacagcccttaccggtttaaagaac 164  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||  |||||||||| ||| |||||||||| | |||||| |||||    
T  14635958 agaccaccaactcaaccagtttcagacgtgtttgaacccagatcaagggatgagttca--acacgttagttacc-aacagccctttcgggtttatagaac 14636054  T

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