View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_58 (Length: 295)

Name: NF0549_low_58
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_58
NF0549_low_58
[»] chr6 (1 HSPs)
chr6 (59-245)||(25153131-25153317)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 59 - 245
Target Start/End: Complemental strand, 25153317 - 25153131
Alignment:
Q  59 catcatcagtccctgaagccattatctgagaaatatacatgacttcagtgcctcagttcacaaaatcaaaagagcagtttaactaaaaaccaaagacgta 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25153317 catcatcagtccctgaagccattatctgagaaatatacatgacttcagtgcctcagttcacaaaatcaaaagagcagtttaactaaaaaccaaagacgta 25153218  T
Q  159 caccataccgtaagtgttccgtcggaggccctttgaacaccaccggaaacaggggcatccaccaactttaaattcttaccttcatct 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25153217 caccataccgtaagtgttccgtcggaggccctttgaacaccaccggaaacaggggcatccaccaactttaaattcttaccttcatct 25153131  T

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