View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_6 (Length: 601)
Name: NF0549_low_6
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 324 - 590
Target Start/End: Complemental strand, 3897110 - 3896844
Alignment:
| Q |
324 |
ctgacataaatatgtcaaaatgccagaattactaaataatgtaaatatgcttgttcccaaaaatctgttaagagattgtacaatgtgagcataaatgaca |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897110 |
ctgacataaatatgtcaaaatgccagaattactaaataatgtaaatatgcttgttcccaaaaatctgttaagagattgtacaatgtgagcataaatgaca |
3897011 |
T |
|
| Q |
424 |
gcaaagtaaatacgtaatgcaaaatagtaagaaaaaggatcttcgctcacttgtggataaagatcacaggtgcccaactccttaatagccaatggtaacc |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897010 |
gcaaagtaaatacgtaatgcaaaatagtaagaaaaaggatctttgctcacttgtggataaagatcacaggtgcccaactccttaatagccaatggtaacc |
3896911 |
T |
|
| Q |
524 |
tttctccatcagcaatctgaaaagcacagtactcatctgtgtcattaataaaaaattaagttttcat |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3896910 |
tttctccatcagcaatctgaaaagcacagtactcatctgtgtcattaataaaaaattaagttttcat |
3896844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 29 - 292
Target Start/End: Complemental strand, 3897405 - 3897142
Alignment:
| Q |
29 |
atattcctcttctccattctgttcagtcaactgcaacaagaggacataaaaacaacataaagtagcagtctagtacaaacattcacaatcaataggagtt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3897405 |
atattcctcttctccattctgttcagtcaactgcaacaagaggacataaaaacaacataaagtaacagtctagtacaaacattcacaatcaataggagtt |
3897306 |
T |
|
| Q |
129 |
gtagattgttcattccattgcagaaaacattagtttatgggaactgctggaaacagcattgtgagtattcgaaacagtagaatggcgaagatcaattgaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897305 |
gtagattgttcattccattgcagaaaacattagtttatgggaactgctggaaacagcattgtgagtattcgaaacagtagaatggcgaagatcaattgaa |
3897206 |
T |
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| Q |
229 |
tcctataaaacaataacagactttttgcatacagtatcaaaacattaaaatatctggccaggtt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897205 |
tcctataaaacaataacagactttttgcatacagtatcaaaacattaaaatatctggccaggtt |
3897142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 324 - 587
Target Start/End: Original strand, 3140721 - 3140985
Alignment:
| Q |
324 |
ctgacataaatatgtcaaaatgccagaattactaaataatgtaaatatgcttgttcccaaaaatctgttaagaga-ttgtacaatgtgagcataaatgac |
422 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
3140721 |
ctgacataaatatatcaaaatgccagaattgctaaataatgtaaatatgcttgttcccaaaaatttgttaagagaattgtacaatgtgagcataaatgac |
3140820 |
T |
|
| Q |
423 |
agcaaagtaaatacgtaatgcaaaatagtaagaaaaaggatcttcgctcacttgtggataaagatcacaggtgcccaactccttaatagccaatggtaac |
522 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3140821 |
agcaaagtaaataagtaatgcaaaatgataagaaaaaggatcttctctcacttgtggatagagatcacaggtgcccaactccttaatagccaatggtaac |
3140920 |
T |
|
| Q |
523 |
ctttctccatcagcaatctgaaaagcacagtactcatctgtgtcattaataaaaaattaagtttt |
587 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3140921 |
ctttctccatcagcaatctgaaaagcacagtactcgtctgtgtcattaataaaaaattaagtttt |
3140985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 3132851 - 3133028
Alignment:
| Q |
33 |
tcctcttctccattctgttcagtcaactgcaacaagaggacataaaaacaacataaagtagcagtctagtacaaacattcacaatcaataggagttgtag |
132 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
3132851 |
tcctcttctccattatgttcggtcaactgcaacaagaagacatgaaaacaacataaagtaacagtctagtacaaacattcatgatcaataggagttgtag |
3132950 |
T |
|
| Q |
133 |
attgttcattccattgcagaaaacattagtttatgggaactgctggaaacagcattgtgagtattcgaaacagtagaa |
210 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
3132951 |
attgttccttccatcgcagaaaacattagtttatgggaaatgctggaaacagcattgtgagtattggaaacagtagaa |
3133028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 215 - 292
Target Start/End: Original strand, 3140612 - 3140689
Alignment:
| Q |
215 |
gaagatcaattgaatcctataaaacaataacagactttttgcatacagtatcaaaacattaaaatatctggccaggtt |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
3140612 |
gaagatcaattgaatcctataaaacaataacagaacttttgcatacagtatcaaaacattaaaatacatggccaggtt |
3140689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 590
Target Start/End: Complemental strand, 602357 - 602212
Alignment:
| Q |
445 |
aaatagtaagaaaaaggatcttcgctcacttgtggataaagatcacaggtgcccaactccttaatagccaatggtaacctttctccatcagcaatctgaa |
544 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||| ||| ||| | |||| |||||||| ||| ||||||||| ||||||||||| |||||| || |
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| T |
602357 |
aaatagtaagaaaaagggttttcgctcacttgtggattgagaatacatgctcccagctccttaacagctaatggtaacatttctccatcaacaatctaaa |
602258 |
T |
|
| Q |
545 |
aagcacagtactcatctgtgtcattaataaaaaattaagttttcat |
590 |
Q |
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||| ||| || | |||| | ||||||||| |||||||||||||||| |
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| T |
602257 |
aagtacaataattatctttatcattaatacaaaattaagttttcat |
602212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 602751 - 602691
Alignment:
| Q |
218 |
gatcaattgaatcctataaaacaataacagactttttgcatacagtatcaaaacattaaaa |
278 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
602751 |
gatcaattaaatcctataaaacaataacagacttttaacatacactatcaaaacattaaaa |
602691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 469 - 557
Target Start/End: Complemental strand, 44049709 - 44049621
Alignment:
| Q |
469 |
ctcacttgtggataaagatcacaggtgcccaactccttaatagccaatggtaacctttctccatcagcaatctgaaaagcacagtactc |
557 |
Q |
| |
|
||||||||||| ||||||||||| || |||| |||||||| |||||| |||||||||||||||||||||| || ||||||| ||||||| |
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|
| T |
44049709 |
ctcacttgtgggtaaagatcacaagtacccagctccttaacagccaaaggtaacctttctccatcagcaacctaaaaagcatagtactc |
44049621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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