View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_64 (Length: 284)
Name: NF0549_low_64
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 36018150 - 36017907
Alignment:
| Q |
13 |
aatatttaaaccccttaaccacctccacttctttctcagcttgtttccttctccaaaagagaataacacaagcttcatttcaataacacacactttttcc |
112 |
Q |
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| T |
36018150 |
aatatttaaaccccttaaccacctccacttctttctcagcttgtttccttctccaaaagagaataacacaagcttcatttcaataacacacactttttcc |
36018051 |
T |
|
| Q |
113 |
ctttctattttcaattgctttcaacacccccatttcaataatgaatactctatctccacctccctcttctaacaccctcaatttcaaccacataacaata |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36018050 |
ctttctatttttaattgctttcaacacccccatttcaataatgaatactctatctccacctccctcttctaacaccctcaatttcaaccacataacaata |
36017951 |
T |
|
| Q |
213 |
acacggccgtggaaatttccaaaccggcttggtccgaaccgtgt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36017950 |
acacggccgtggaaatttccaaaccggcttggtccgaaccgtgt |
36017907 |
T |
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