View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0549_low_66 (Length: 279)
Name: NF0549_low_66
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_66 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 24184511 - 24184275
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24184511 |
cctttgtctctttttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
24184412 |
T |
|
| Q |
130 |
acactgctgttacgagnnnnnnnnngttttctgcagtcatggtatgagggtctgcatcatttgcagtttggatgatgattggatttttgttgttatgttg |
229 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| || |
|
|
| T |
24184411 |
acactgttgttacgagtttttttttgttttctgcagtcatggtatgagggtctgcatgatttgcagtttgggtgatgattggctttttgttgttatgctg |
24184312 |
T |
|
| Q |
230 |
tatagccacatgccttttgttttccctgtttcggcct |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24184311 |
tatagccacatgccttttgttttccctgtttcggcct |
24184275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 408029 - 407792
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
408029 |
cctttgtctctttttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
407930 |
T |
|
| Q |
130 |
acactgctgttacgag-nnnnnnnnngttttctgcagtcatggtatgagggtctgcatcatttgcagtttggatgatgattggatttttgttgttatgtt |
228 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
407929 |
acactgctgttacgagttttttttttgttttctgcagtcatggtatgagggtctgcatgatttgcagtttgggcgatgattggctttttgttgttatgct |
407830 |
T |
|
| Q |
229 |
gtatagccacatgccttttgttttccctgtttcggcct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
407829 |
gtatagccacatgccttttgttttccctgtttcggcct |
407792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 415913 - 416150
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
415913 |
cctttgtctctttttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
416012 |
T |
|
| Q |
130 |
acactgctgttacgag-nnnnnnnnngttttctgcagtcatggtatgagggtctgcatcatttgcagtttggatgatgattggatttttgttgttatgtt |
228 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
416013 |
acactgctgttacgagttttttttttgttttctgcagtcatggtatgagggtctgcatgatttgcagtttgggcgatgattggctttttgttgttatgct |
416112 |
T |
|
| Q |
229 |
gtatagccacatgccttttgttttccctgtttcggcct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
416113 |
gtatagccacatgccttttgttttccctgtttcggcct |
416150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 6457809 - 6457721
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaag |
118 |
Q |
| |
|
||||||| |||||||| |||||| | |||| ||||| || | |||||| |||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
6457809 |
cctttgtgtctttttgtaggaacaaaaccacatgaaatatcagcacaataatcatagagacgcaagttgaatgatccagccatcaaaag |
6457721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 49962722 - 49962821
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
||||||||||||| || |||||| |||||| |||| | |||||||| ||| |||||| |||||||||||||||||||||||||| || || |||| |
|
|
| T |
49962722 |
cctttgtctctttctgtaggaacaacaccacatga----tcaacacaataatcttagagacgcaagttgaatgatccagccatcaaaagacatgaataag |
49962817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 6759039 - 6759127
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaag |
118 |
Q |
| |
|
||||||| |||||||| |||||| | |||| ||||| || | |||||| |||| | |||| |||||||||||||||||||||||||| |
|
|
| T |
6759039 |
cctttgtgtctttttgtaggaacaaaaccacatgaaatatcagcacaataatcataaagacgcaagttgaatgatccagccatcaaaag |
6759127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 38792185 - 38792089
Alignment:
| Q |
155 |
gttttctgcagtcatggtatgagggtctgcatcatttgcagtttggatgatgattggatttttgttgttatgttgtatagccacatgccttttgttt |
251 |
Q |
| |
|
|||||||||||||| | ||||| |||||||| ||| | ||| | |||||||||| ||||||||||| |||||| |||||| | ||||||||||| |
|
|
| T |
38792185 |
gttttctgcagtcacgacatgagagtctgcatgattggttgttccggtgatgattggctttttgttgttctgttgtttagccataggccttttgttt |
38792089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 38792257 - 38792225
Alignment:
| Q |
95 |
gttgaatgatccagccatcaaaagccaagatta |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
38792257 |
gttgaatgatccagccatcaaaagccaagatta |
38792225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 24357768 - 24358005
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24357768 |
cctttgtctctttttgaaggaacgacaccatatgaaggatcaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
24357867 |
T |
|
| Q |
130 |
acactgctgttacgag-nnnnnnnnngttttctgcagtcatggtatgagggtctgcatcatttgcagtttggatgatgattggatttttgttgttatgtt |
228 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
24357868 |
acactgctgttacgagttttttttttgttttctgcagtcatggtatgagggtctgcatgatttgcagtttgggcgatgattggctttttgttgttatgct |
24357967 |
T |
|
| Q |
229 |
gtatagccacatgccttttgttttccctgtttcggcct |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24357968 |
gtatagccacatgccttttgttttccctgtttcggcct |
24358005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 24345497 - 24345733
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24345497 |
cctttgtctctttttgaaggaacgacaccatatgaaggatcaacacaatcatca--gagacataagttgaatgatccagccatcaaaagccaagattaag |
24345594 |
T |
|
| Q |
130 |
acactgctgttacgag--nnnnnnnnngttttctgcagtcatggtatgagggtctgcatcatttgcagtttggatgatgattggatttttgttgttatgt |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
24345595 |
acactgctgttacgagtttttttttttgttttctgcagtcatggtatgagggtctgcatgatttgcagtttgggtgatgattggctttttgttgttatgc |
24345694 |
T |
|
| Q |
228 |
tgtatagccacatgccttttgttttccctgtttcggcct |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24345695 |
tgtatagccacatgccttttgttttccctgtttcggcct |
24345733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 38176271 - 38176168
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||| ||| || ||||| |||| |||||| ||||||||||||||||||||||||| || || |||| |
|
|
| T |
38176271 |
cctttgtctctttttgtaggaacaacaccacatgaatgatcaatacaataatcatagagacgcgagttgaatgatccagccatcaaaagacatgaataag |
38176172 |
T |
|
| Q |
130 |
acac |
133 |
Q |
| |
|
|||| |
|
|
| T |
38176171 |
acac |
38176168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 42632651 - 42632550
Alignment:
| Q |
30 |
cctttgtctctttttgaaggaacgacaccatatgaaggataaacacaatcatcacagagacataagttgaatgatccagccatcaaaagccaagattaag |
129 |
Q |
| |
|
||||||| |||||||| |||||| |||||| ||||| || | |||||| |||| ||| || ||||||||||||||||||||||||| || || |||| |
|
|
| T |
42632651 |
cctttgtgtctttttgtaggaacaacaccacatgaaatatcagcacaataatcaaagacgca--agttgaatgatccagccatcaaaagacacgactaag |
42632554 |
T |
|
| Q |
130 |
acac |
133 |
Q |
| |
|
|||| |
|
|
| T |
42632553 |
acac |
42632550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 38 times since January 2019
Visitors: 3673