View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_70 (Length: 261)

Name: NF0549_low_70
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_70
NF0549_low_70
[»] chr7 (13 HSPs)
chr7 (6-261)||(1804775-1805030)
chr7 (8-261)||(41957820-41958069)
chr7 (8-222)||(45414382-45414584)
chr7 (91-202)||(2393260-2393371)
chr7 (6-97)||(10552821-10552912)
chr7 (136-261)||(46529206-46529330)
chr7 (97-222)||(31592547-31592672)
chr7 (94-200)||(11409457-11409563)
chr7 (136-243)||(3938696-3938802)
chr7 (97-222)||(17733817-17733942)
chr7 (99-200)||(13953234-13953336)
chr7 (144-201)||(28510537-28510594)
chr7 (6-63)||(13953995-13954052)
[»] chr3 (12 HSPs)
chr3 (6-178)||(52560407-52560579)
chr3 (101-257)||(18946249-18946405)
chr3 (206-261)||(183531-183586)
chr3 (101-243)||(45031673-45031815)
chr3 (117-222)||(4950648-4950752)
chr3 (94-222)||(53562248-53562375)
chr3 (172-243)||(30716149-30716219)
chr3 (172-243)||(48161763-48161833)
chr3 (99-222)||(37222546-37222670)
chr3 (99-218)||(47867744-47867864)
chr3 (172-243)||(55146837-55146907)
chr3 (98-161)||(18878953-18879017)
[»] scaffold0916 (1 HSPs)
scaffold0916 (8-200)||(338-531)
[»] chr2 (6 HSPs)
chr2 (99-243)||(19508015-19508159)
chr2 (114-219)||(34457167-34457271)
chr2 (116-222)||(26170621-26170727)
chr2 (94-222)||(2121032-2121160)
chr2 (172-243)||(40614463-40614533)
chr2 (136-222)||(29899380-29899466)
[»] chr1 (7 HSPs)
chr1 (94-222)||(13706297-13706425)
chr1 (78-222)||(46200924-46201068)
chr1 (136-222)||(31385562-31385648)
chr1 (97-201)||(18239657-18239762)
chr1 (136-222)||(42465085-42465171)
chr1 (136-204)||(42058400-42058468)
chr1 (136-222)||(15292537-15292622)
[»] chr6 (2 HSPs)
chr6 (136-257)||(1259786-1259906)
chr6 (172-261)||(5614084-5614172)
[»] chr8 (8 HSPs)
chr8 (99-222)||(1550783-1550906)
chr8 (94-222)||(20495281-20495409)
chr8 (97-201)||(21551514-21551617)
chr8 (97-201)||(21552560-21552663)
chr8 (138-222)||(44119153-44119237)
chr8 (94-222)||(23718453-23718581)
chr8 (123-197)||(391436-391510)
chr8 (172-222)||(23877964-23878014)
[»] chr5 (6 HSPs)
chr5 (136-243)||(19870706-19870812)
chr5 (99-222)||(7250246-7250370)
chr5 (136-222)||(10826807-10826893)
chr5 (174-261)||(9042116-9042202)
chr5 (136-222)||(23062433-23062518)
chr5 (136-222)||(42449759-42449845)
[»] scaffold0251 (1 HSPs)
scaffold0251 (97-222)||(1803-1928)
[»] scaffold0184 (1 HSPs)
scaffold0184 (94-222)||(28395-28523)
[»] scaffold0078 (1 HSPs)
scaffold0078 (94-222)||(44321-44449)
[»] chr4 (5 HSPs)
chr4 (99-222)||(12028095-12028219)
chr4 (136-243)||(55741177-55741283)
chr4 (172-243)||(39390621-39390691)
chr4 (136-222)||(31302501-31302586)
chr4 (97-222)||(54603945-54604070)
[»] scaffold1813 (1 HSPs)
scaffold1813 (94-222)||(605-733)
[»] scaffold0013 (1 HSPs)
scaffold0013 (172-222)||(86660-86710)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 1805030 - 1804775
Alignment:
Q  6 agttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggttacagtggtacatgcaaaacattttcattttcaatccaaaatca 105  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1805030 agttaactgtcgttctaatgtatatgatatgaacgcagaaacctccattttctagttacagtgttacatgcaaaacattttcattttcaatccaaaatca 1804931  T
Q  106 cccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1804930 cccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagggtg 1804831  T
Q  206 ctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1804830 ctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 1804775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 41957820 - 41958069
Alignment:
Q  8 ttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggttacagtggtacatgcaaaacattttcattttcaatccaaaatcacc 107  Q
    |||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41957820 ttaactgtcgttctaatgtttatgatatgaacgcataaacctccattttctggttacagtgttacatgcaaaacattttcattttcaatccaaaatcacc 41957919  T
Q  108 caaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgct 207  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  41957920 caaacctcatttgctcgaaaatcgtcctaatttcttcaagtaaatcac----aagtcatcttaatcctatttagatgcaatgtagtttgtttagggtgct 41958015  T
Q  208 agttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41958016 agttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 41958069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 45414382 - 45414584
Alignment:
Q  8 ttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggttacagtggtacatgcaaaacattttcattttcaatccaaaatcacc 107  Q
    ||||||| ||||  ||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    
T  45414382 ttaactgccgttgcaatgtttatgatatgaacgtagaaacctccattttctggttacagtgttacatgcaaaacactttcattttcaatctaaaatcacc 45414481  T
Q  108 caaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgct 207  Q
    |||| ||||||||||||||||||||||| |||||||           ||||||||||||||||||| |||||||| |||||||||||||||||| ||| |    
T  45414482 caaatctcatttgctcgaaaatcatccttatttctt-----------caagtaagtcatcttaatcttatttacacgcaatgtagtttgtttagggtgtt 45414570  T
Q  208 agttttcataatttt 222  Q
    | |||||||||||||    
T  45414571 a-ttttcataatttt 45414584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 2393371 - 2393260
Alignment:
Q  91 ttcaatccaaaatcacccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgt 190  Q
    ||||||| ||||||||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  2393371 ttcaatcaaaaatcacccaaacctcatttgcacaaaaatcatgctaatttgttcaagtaaatcacaagtaagtcattttcttcctatttacatgcaatgt 2393272  T
Q  191 agtttgtttaga 202  Q
    || |||||||||    
T  2393271 agcttgtttaga 2393260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 10552821 - 10552912
Alignment:
Q  6 agttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggttacagtggtacatgcaaaacattttcattttcaatc 97  Q
    |||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10552821 agttaactgtcgttctaatgtttatgatatgaacgcagaaaccaccattttctggttatagtgttacatgcaaaacattttcattttcaatc 10552912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 46529330 - 46529206
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgtt 235  Q
    |||||| |||| ||| |||||||||||| || |   ||||||||| |||||||||||||||||||| ||| |||||||||||| ||| |  |||||||||    
T  46529330 aatttcatcaattaattcacaagtaagttatttccttcctatttaaatgcaatgtagtttgtttagggtgttagttttcataaatttga-gcaaaatgtt 46529232  T
Q  236 agttttagatagttttaggttaggtt 261  Q
    ||||||||||||||||| ||||||||    
T  46529231 agttttagatagttttaagttaggtt 46529206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 31592547 - 31592672
Alignment:
Q  97 ccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagttt 195  Q
    ||||| |||||||||||| ||||||| |||||||||||| | || |||||||||||||||||||||||    ||  ||||||||||||||||||||| ||    
T  31592547 ccaaattcacccaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggtt 31592646  T
Q  196 gtttagagtgctagttttcataatttt 222  Q
    |||||| ||| || |||||||||||||    
T  31592647 gtttagggtgtta-ttttcataatttt 31592672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 11409563 - 11409457
Alignment:
Q  94 aatccaaaatcacccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagt 193  Q
    ||||||||||||||||| | | | |||| ||||||||||||||| |||||||||||||||||||||||||  | ||  | | |||||||||||||||||     
T  11409563 aatccaaaatcacccaatcttaaattgcacgaaaatcatcctaacttcttcaagtaaatcacaagtaagttcttttctttcgatttacatgcaatgtagg 11409464  T
Q  194 ttgttta 200  Q
    |||||||    
T  11409463 ttgttta 11409457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 3938696 - 3938802
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgtt 235  Q
    |||||||| || ||| ||||||||||||  | ||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| |  ||||||| |    
T  3938696 aatttctttaactaattcacaagtaagttcttttcttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttga-gcaaaatgct 3938794  T
Q  236 agttttag 243  Q
    ||||||||    
T  3938795 agttttag 3938802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 17733942 - 17733817
Alignment:
Q  97 ccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagttt 195  Q
    ||||| |||||||||| | ||||||| |||||||||||| | || |||||||||||||||||||||||    ||  ||||||||||||||||||||| ||    
T  17733942 ccaaattcacccaaactttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggtt 17733843  T
Q  196 gtttagagtgctagttttcataatttt 222  Q
    |||||| ||| || |||| ||||||||    
T  17733842 gtttagggtgtta-ttttaataatttt 17733817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 13953336 - 13953234
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||||| ||| |||||||||||||||  | |||||| |||| ||| |||||||||||| || ||  || |||||||| ||||||||||||||    
T  13953336 aaaatcacccaaacttcaatttgctcgaaaatcaatcaaatttcatcaattaattcacaagtaagttatattcttcatatttacaagcaatgtagtttgt 13953237  T
Q  198 tta 200  Q
    |||    
T  13953236 tta 13953234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 28510594 - 28510537
Alignment:
Q  144 caagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttag 201  Q
    |||||||||| |||||||||||| ||  ||||||||||||||||||||| ||||||||    
T  28510594 caagtaaatctcaagtaagtcattttcttcctatttacatgcaatgtaggttgtttag 28510537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 13954052 - 13953995
Alignment:
Q  6 agttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggtta 63  Q
    ||||||||| ||||  ||||| |||||||||||  ||||||| |||||||||||||||    
T  13954052 agttaactgccgttgcaatgtttatgatatgaaaacagaaacctccattttctggtta 13953995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 52560407 - 52560579
Alignment:
Q  6 agttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggttacagtggtacatgcaaaacattttcattttcaatccaaaatca 105  Q
    |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  52560407 agttaactgtcgttctaatttatatgatatgaacgcagaaacctccattttctggttataatgttacatgcaaaacattttcattttcaatccaaaatca 52560506  T
Q  106 cccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatt 178  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52560507 cccaaacctcatttgctcgaaaatcatcctaatttcatcaagtaaatcacaagtaagtcatcttaatcctatt 52560579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 18946405 - 18946249
Alignment:
Q  101 aatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgttt 199  Q
    |||||||||||| ||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |   ||||||||||||||||||||||||||||    
T  18946405 aatcacccaaacttcaatttgctcgaaaatcattcaaatttcatcaattaattcacaagtaagttatttccttcctatttacatgcaatgtagtttgttt 18946306  T
Q  200 agagtgctagttttcataatttttattcaaaatgttagttttagatagttttaggtta 257  Q
    || ||| |||||||||||| ||| |  |||||||||||||||||||||||||||||||    
T  18946305 agggtgttagttttcataaatttga-gcaaaatgttagttttagatagttttaggtta 18946249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 183586 - 183531
Alignment:
Q  206 ctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  183586 ctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 183531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 45031673 - 45031815
Alignment:
Q  101 aatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgttt 199  Q
    |||||||||||| ||| |||||||||||||||| | |||||| |||| ||| |||||||||||| || |   |||| |||||||||||||||||||||||    
T  45031673 aatcacccaaacttcaatttgctcgaaaatcattcaaatttcatcaattaattcacaagtaagttatttccttcctgtttacatgcaatgtagtttgttt 45031772  T
Q  200 agagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    ||  || |||||||||||| ||| |  |||||||||||||||||    
T  45031773 aggatgttagttttcataaatttga-gcaaaatgttagttttag 45031815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 4950752 - 4950648
Alignment:
Q  117 tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcat 216  Q
    ||||| |||||||||||| | || ||||||||||||||||||||||| || ||  | |||||||||||||| ||||||||||||| ||| || |||||||    
T  4950752 tttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagttattttctttctatttacatgcaaggtagtttgtttagggtgtta-ttttcat 4950654  T
Q  217 aatttt 222  Q
    ||||||    
T  4950653 aatttt 4950648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 53562375 - 53562248
Alignment:
Q  94 aatccaaaatcacccaaacc-tcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtag 192  Q
    |||||||||||||||||||| |||||| | |||||||||||| | || |||||||||||| ||||||||||    ||  |||||||||||||||||||||    
T  53562375 aatccaaaatcacccaaaccttcatttacacgaaaatcatccaatttgcttcaagtaaat-acaagtaagtacctttcttcctatttacatgcaatgtag 53562277  T
Q  193 tttgtttagagtgctagttttcataatttt 222  Q
     |||||||| ||| | ||||||||||||||    
T  53562276 gttgtttagggtg-ttgttttcataatttt 53562248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 30716149 - 30716219
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    ||||||||||||||| |||||||||||||| ||| |||||||||||||||| | || |||||||||||||||    
T  30716149 tcctatttacatgcagtgtagtttgtttagggtgttagttttcataattttgagtc-aaatgttagttttag 30716219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 48161763 - 48161833
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||| ||| |  |||||||||||||||||    
T  48161763 tcctatttacatgcaatgtagtttgtttagggtgttagttttcataaatttga-gcaaaatgttagttttag 48161833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 37222670 - 37222546
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||| ||| | ||||| ||||    ||  || |||||||||||||||||| ||      
T  37222670 aaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaatttacaagaaagtacctttcttcttatttacatgcaatgtaggtttc 37222571  T
Q  198 ttagagtgctagttttcataatttt 222  Q
    |||| ||| ||||||||||||||||    
T  37222570 ttagggtgttagttttcataatttt 37222546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 47867744 - 47867864
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||| ||| ||||  ||||||    ||  || |||||||||||||||||| |||     
T  47867744 aaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcactggtaagtacctttcttcttatttacatgcaatgtaggttgc 47867843  T
Q  198 ttagagtgctagttttcataa 218  Q
    |||| ||| ||||||||||||    
T  47867844 ttagggtgttagttttcataa 47867864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 55146837 - 55146907
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||| |  | |||||||||||||||    
T  55146837 tcctatttacatgcaatgtagtttctttagggtgttagttttcataattttga-gccaaatgttagttttag 55146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 18878953 - 18879017
Alignment:
Q  98 caaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaa 161  Q
    |||| |||||||||||| ||||||| ||||||| |||| | || |||||||||||||||||||||    
T  18878953 caaattcacccaaaccttcatttgcacgaaaattatccaatttgcttcaagtaaatcacaagtaa 18879017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 200
Target Start/End: Original strand, 338 - 531
Alignment:
Q  8 ttaactgtcgttttaatgtatatgatatgaacgcagaaacttccattttctggttacagt--ggtacatgcaaaacattttcattttcaatccaaaatca 105  Q
    ||||||| ||||  ||||| ||||||||||| ||||||||| ||| | || ||||| |||  | ||||||||||||| || |||||||||||||||||||    
T  338 ttaactgccgttgcaatgtttatgatatgaatgcagaaact-ccagtatcgggttatagtacgttacatgcaaaacacttccattttcaatccaaaatca 436  T
Q  106 cccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgttta 200  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  437 cccaatcctcatttgcttgaaaatcatcctaatttcttcaagtaagtcacaagtaagtcatcttaatcctatttacatgcaatgtaggttgttta 531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 19508015 - 19508159
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||| ||| ||||||||||||  | |   |||||||||||||||||||| |||||    
T  19508015 aaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcacaagtaagttctttccttcctatttacatgcaatgtactttgt 19508114  T
Q  198 ttagagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    |||| ||| ||||||| |||||||| |  |||||||||||||||||    
T  19508115 ttagggtgttagtttttataattttga-gcaaaatgttagttttag 19508159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 34457167 - 34457271
Alignment:
Q  114 tcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagtttt 213  Q
    |||||||| |||||||||||| | || ||||||||||||||||||||||| || ||  | |||||||||||||||||||||||||||| ||| || ||||    
T  34457167 tcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagttattttctttctatttacatgcaatgtagtttgtttagggtgtta-tttt 34457265  T
Q  214 cataat 219  Q
    ||||||    
T  34457266 cataat 34457271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 26170621 - 26170727
Alignment:
Q  116 atttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttca 215  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||||||||  | ||  || |||||||||||||||||| |||||||| ||| ||||| |||    
T  26170621 atttgctcgaaaatcatccaaatttcatcaattaactcacaagtaagttcttttcttcttatttacatgcaatgtaggttgtttagggtgttagttctca 26170720  T
Q  216 taatttt 222  Q
    |||||||    
T  26170721 taatttt 26170727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 2121160 - 2121032
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtag 192  Q
    |||| ||||||| |||||||| ||||||| |||||||||||| | || ||||||| |||||||||||||||    ||  |||||||||||||||||||||    
T  2121160 aatctaaaatcatccaaaccttcatttgcacgaaaatcatccaatttgcttcaaggaaatcacaagtaagtatatttcttcctatttacatgcaatgtag 2121061  T
Q  193 tttgtttagagtgctagttttcataatttt 222  Q
     ||||| || ||| || |||||||||||||    
T  2121060 gttgttcagggtgtta-ttttcataatttt 2121032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 40614533 - 40614463
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||| |  |||||| ||||||||||    
T  40614533 tcctatatacatgcaatgtagtttgtttagggtgttagttttcataattttga-gcaaaatattagttttag 40614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 29899380 - 29899466
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||| | ||||||| || || ||  ||||||||  ||||||||||| |||||||| ||| ||||||||||||||||    
T  29899380 aatttcttcaagtaattaacaagtatgttattttcttcctatttcaatgcaatgtaggttgtttagggtgttagttttcataatttt 29899466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 13706297 - 13706425
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaattt-cttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgta 191  Q
    |||||||||||| |||||||| ||||||| |||||||||| ||||||| |||||||||||||| |||||||| || ||  | ||||||||||||||||||    
T  13706297 aatccaaaatcatccaaaccttcatttgcacgaaaatcat-ctaatttgcttcaagtaaatcataagtaagttattttgtttctatttacatgcaatgta 13706395  T
Q  192 gtttgtttagagtgctagttttcataatttt 222  Q
    |||||||||| ||| || |||||||||||||    
T  13706396 gtttgtttagggtgtta-ttttcataatttt 13706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 222
Target Start/End: Complemental strand, 46201068 - 46200924
Alignment:
Q  78 aaacattttcattttcaatccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatccta 176  Q
    ||||||||||| ||| |||| ||| ||||| |||||| ||||||| |||||||||||| | || | |||||||||||||||||||||    ||  |||||    
T  46201068 aaacattttcaattttaatcaaaattcaccaaaaccttcatttgcacgaaaatcatccaatttgcctcaagtaaatcacaagtaagtacctttcttccta 46200969  T
Q  177 tttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    |||||||||||||||| |||||||| ||| || |||||||||||||    
T  46200968 tttacatgcaatgtaggttgtttagggtgtta-ttttcataatttt 46200924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 31385562 - 31385648
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||| | |||||||||| || ||  ||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  31385562 aatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcataatttt 31385648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 201
Target Start/End: Original strand, 18239657 - 18239762
Alignment:
Q  97 ccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagttt 195  Q
    ||||| |||||||||||| ||||||| |||||||||||| | || |||||||||||||||||||||||    || ||||||||||| |||||||||| ||    
T  18239657 ccaaattcacccaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcatcctatttacttgcaatgtaggtt 18239756  T
Q  196 gtttag 201  Q
    ||||||    
T  18239757 gtttag 18239762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 42465171 - 42465085
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||| | |||||||||| || ||  ||||||||||||| ||||||| |||||||| ||| ||||||||||||||||    
T  42465171 aatttcttcaagtaattaacaagtaagttattttcttcctatttacatgaaatgtaggttgtttagggtgttagttttcataatttt 42465085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 42058468 - 42058400
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagt 204  Q
    ||||| ||||||||| | |||||||||| || ||| | |||||||||||||| ||||||||||||||||    
T  42058468 aatttgttcaagtaattaacaagtaagttattttatttctatttacatgcaacgtagtttgtttagagt 42058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 15292622 - 15292537
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||| ||||||||| | |||||||||| || ||| |  |||||||||||| |||||||||||||| ||| || |||||||||||||    
T  15292622 aatttgttcaagtaattaacaagtaagttattttatttttatttacatgcattgtagtttgtttagggtgtta-ttttcataatttt 15292537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 1259906 - 1259786
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgtt 235  Q
    ||||||||||| ||| ||||||||||||  | |   ||||||||| |||||||||||||||||||| ||| ||||||| |||||||| |  |||||||||    
T  1259906 aatttcttcaattaattcacaagtaagttctttccttcctatttatatgcaatgtagtttgtttagggtgttagtttttataattttga-gcaaaatgtt 1259808  T
Q  236 agttttagatagttttaggtta 257  Q
    ||||||||||||||||||||||    
T  1259807 agttttagatagttttaggtta 1259786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 261
Target Start/End: Original strand, 5614084 - 5614172
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 261  Q
    |||||||||||||||||||||| ||||||| ||| |||||||||||| ||| |  ||||||||||||||||| |||||||||||||||||    
T  5614084 tcctatttacatgcaatgtagtctgtttagggtgttagttttcataagtttga-gcaaaatgttagttttaggtagttttaggttaggtt 5614172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 1550783 - 1550906
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||||| ||| ||||||| |||||||||| |||||| |||| ||| |||||||||||| || ||  ||||||||||||||||||||| ||||    
T  1550783 aaaatcacccaaacttcaatttgctccaaaatcatccaaatttcatcaa-taattcacaagtaagttattttcttcctatttacatgcaatgtagattgt 1550881  T
Q  198 ttagagtgctagttttcataatttt 222  Q
    |||| ||  ||||||||||||||||    
T  1550882 ttagggtattagttttcataatttt 1550906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 20495409 - 20495281
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtag 192  Q
    ||||||||||||||||||||| ||||||| |||||||||||| | ||  ||||| ||||||||||||||||    ||  |||||||||||||||||||||    
T  20495409 aatccaaaatcacccaaaccttcatttgcacgaaaatcatccaatttgattcaactaaatcacaagtaagtacctttcctcctatttacatgcaatgtag 20495310  T
Q  193 tttgtttagagtgctagttttcataatttt 222  Q
     |||||||| ||| || | |||||||||||    
T  20495309 gttgtttagggtgtta-tattcataatttt 20495281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 21551617 - 21551514
Alignment:
Q  97 ccaaaatcacccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttg 196  Q
    |||||||||||||| | |  ||||| ||| || |||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||| | || |||    
T  21551617 ccaaaatcacccaagcatattttgcacgacaagcatcctaatttcttcaagtaaatcacaa-taagtcattttcttcctatttacatgcaacggaggttg 21551519  T
Q  197 tttag 201  Q
    |||||    
T  21551518 tttag 21551514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 21552663 - 21552560
Alignment:
Q  97 ccaaaatcacccaaacctcatttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttg 196  Q
    |||||||||||||| | |  ||||| ||| || |||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||| | || |||    
T  21552663 ccaaaatcacccaagcatattttgcacgacaagcatcctaatttcttcaagtaaatcacaa-taagtcattttcttcctatttacatgcaacggaggttg 21552565  T
Q  197 tttag 201  Q
    |||||    
T  21552564 tttag 21552560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 44119237 - 44119153
Alignment:
Q  138 tttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||| | |||||||||| || ||  ||||||||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  44119237 tttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcatagtttt 44119153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 23718581 - 23718453
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaattt-cttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgta 191  Q
    |||||||| | |||||||||| ||||||| ||||||||||| |||||| ||||||||||||||||| |||||    ||  ||||||||||||||||||||    
T  23718581 aatccaaatttacccaaaccttcatttgcacgaaaatcatc-taatttgcttcaagtaaatcacaaataagtacctttcttcctatttacatgcaatgta 23718483  T
Q  192 gtttgtttagagtgctagttttcataatttt 222  Q
    | |||||||| ||  || |||||||||||||    
T  23718482 ggttgtttagggttgta-ttttcataatttt 23718453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 391510 - 391436
Alignment:
Q  123 cgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||| |||||||||||  |||||| |||||||| ||| |||| ||||| |||| ||||||| |||||    
T  391510 cgaaaatcatccaaatttcttcaacaaaatcataagtaagtaatcctaatgctattaacatacaatgtaatttgt 391436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 23877964 - 23878014
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||||||||| |||||||| ||| ||||||| ||||||||    
T  23877964 tcctatttacatgcaatgtagattgtttagggtgttagtttttataatttt 23878014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 243
Target Start/End: Original strand, 19870706 - 19870812
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgtt 235  Q
    |||||| |||| ||| |||||||||||| || |   |||||||||||||||||||||||||||||||||| |||||||||||||||| | | ||||||||    
T  19870706 aatttcatcaattaattcacaagtaagttatttccttcctatttacatgcaatgtagtttgtttagagtgttagttttcataattttgagt-aaaatgtt 19870804  T
Q  236 agttttag 243  Q
    ||||||||    
T  19870805 agttttag 19870812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 7250246 - 7250370
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatc-ttaatcctatttacatgcaatgtagtttg 196  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||| ||| |||||||||||| ||| ||  || |||||||||||||||||| |||    
T  7250246 aaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcacaagtaagt-atctttcttcttatttacatgcaatgtaggttg 7250344  T
Q  197 tttagagtgctagttttcataatttt 222  Q
     |||| ||| ||||||||||||||||    
T  7250345 cttagggtgttagttttcataatttt 7250370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 10826893 - 10826807
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||| | |||||||||| || ||  ||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  10826893 aatttcttcaagtaattaacaagtaagttattttcttcctatttacatgcaatgtaggttgtttagggtgttagttttcataatttt 10826807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 261
Target Start/End: Complemental strand, 9042202 - 9042116
Alignment:
Q  174 ctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttagatagttttaggttaggtt 261  Q
    ||||||||||| |||||||||||||||| ||| |||||||||||| ||| |  ||||||||||||||||| |||||||| ||||||||    
T  9042202 ctatttacatgtaatgtagtttgtttagggtgttagttttcataaatttga-gcaaaatgttagttttaggtagttttatgttaggtt 9042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 23062433 - 23062518
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||| ||||||||| | |||||||||| || ||| | |||||||||||||||||||||||||||| ||| || |||||||||||||    
T  23062433 aatttgttcaagtaattaacaagtaagttattttatttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataatttt 23062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 222
Target Start/End: Complemental strand, 42449845 - 42449759
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||| | |||||||||| || ||  | |||||| |||||||||||| |||||||| ||| ||||||||||||||||    
T  42449845 aatttcttcaagtaattaacaagtaagttattttctttctatttgcatgcaatgtaggttgtttagggtgttagttttcataatttt 42449759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 1928 - 1803
Alignment:
Q  97 ccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagttt 195  Q
    ||||| |||||||||||| ||||||| |||||||||||| | || |||||||||||||||||||||||    ||  ||||||||||||||||||||| ||    
T  1928 ccaaattcacccaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacatgcaatgtaggtt 1829  T
Q  196 gtttagagtgctagttttcataatttt 222  Q
    |||||| ||| || |||||||||||||    
T  1828 gtttagggtgtta-ttttcataatttt 1803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 28523 - 28395
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtag 192  Q
    ||||||||||||||||||||| ||||| | |||||||||||| | || |||||| ||||||||||||||||    ||  |||||||||||||||||||||    
T  28523 aatccaaaatcacccaaaccttcatttccacgaaaatcatccaatttgcttcaactaaatcacaagtaagtacctttcttcctatttacatgcaatgtag 28424  T
Q  193 tttgtttagagtgctagttttcataatttt 222  Q
     |||||||| ||| || |||||||||||||    
T  28423 gttgtttagggtgtta-ttttcataatttt 28395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 44321 - 44449
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtag 192  Q
    ||||||||||||||||||||| ||||| | |||||||||||| | || |||||| ||||||||||||||||    ||  |||||||||||||||||||||    
T  44321 aatccaaaatcacccaaaccttcatttccacgaaaatcatccaatttgcttcaactaaatcacaagtaagtacctttcttcctatttacatgcaatgtag 44420  T
Q  193 tttgtttagagtgctagttttcataatttt 222  Q
     |||||||| ||| || |||||||||||||    
T  44421 gttgtttagggtgtta-ttttcataatttt 44449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 12028219 - 12028095
Alignment:
Q  99 aaaatcacccaaacctca-tttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgt 197  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||| ||| ||||||||||||    ||  || |||||||||||||||||| |||     
T  12028219 aaaatcacccaaacttcaatttgctcgaaaatcatccaaatttcatcaattaattcacaagtaagtacctttcttcttatttacatgcaatgtaggttgc 12028120  T
Q  198 ttagagtgctagttttcataatttt 222  Q
    |||| ||| ||||||||||||||||    
T  12028119 ttagggtgttagttttcataatttt 12028095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 243
Target Start/End: Complemental strand, 55741283 - 55741177
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgtt 235  Q
    ||||||||||| ||| ||||||| ||||  | ||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||    
T  55741283 aatttcttcaattaattcacaagaaagttcttttcttcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttga-gcaaaatgtt 55741185  T
Q  236 agttttag 243  Q
    ||||||||    
T  55741184 agttttag 55741177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 39390691 - 39390621
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttttattcaaaatgttagttttag 243  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||||||    
T  39390691 tcctatttacatgcaatgtagtttgtttagggtgttagttttcataattttga-gcaaaatgttagttttag 39390621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 31302501 - 31302586
Alignment:
Q  136 aatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    ||||||||||||||| | |||||||||| || ||| | |||||||||||||||||||||||||||| ||| || |||||||||||||    
T  31302501 aatttcttcaagtaattaacaagtaagttattttatttctatttacatgcaatgtagtttgtttagggtgtta-ttttcataatttt 31302586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 54604070 - 54603945
Alignment:
Q  97 ccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtagttt 195  Q
    ||||| |||||||||| | ||||||| |||||||||||| | || |||||||||||||||||||||||    ||  ||||||||||| ||||||||| ||    
T  54604070 ccaaattcacccaaacattcatttgcacgaaaatcatccaatttgcttcaagtaaatcacaagtaagtacctttcttcctatttacaagcaatgtaggtt 54603971  T
Q  196 gtttagagtgctagttttcataatttt 222  Q
    |||||| ||| || |||||||||||||    
T  54603970 gtttagggtgtta-ttttcataatttt 54603945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1813 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1813
Description:

Target: scaffold1813; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 733 - 605
Alignment:
Q  94 aatccaaaatcacccaaacct-catttgctcgaaaatcatcctaatttcttcaagtaaatcacaagtaagtcatcttaatcctatttacatgcaatgtag 192  Q
    ||||||||||| | ||||||| ||||||| |||||||||||| | || |||||||||| | |||||||||| || ||  | |||||||||||||||||||    
T  733 aatccaaaatccctcaaaccttcatttgcacgaaaatcatccaatttgcttcaagtaattaacaagtaagttattttctttctatttacatgcaatgtag 634  T
Q  193 tttgtttagagtgctagttttcataatttt 222  Q
    |||||||||  || || |||||||||||||    
T  633 tttgtttaggatgtta-ttttcataatttt 605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 86710 - 86660
Alignment:
Q  172 tcctatttacatgcaatgtagtttgtttagagtgctagttttcataatttt 222  Q
    |||||||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  86710 tcctatttacatacaatgtaggttgtttagggtgttagttttcataatttt 86660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 45 times since January 2019
Visitors: 3673