View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_74 (Length: 254)

Name: NF0549_low_74
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_74
NF0549_low_74
[»] chr7 (24 HSPs)
chr7 (30-215)||(1072085-1072270)
chr7 (30-252)||(7954823-7955046)
chr7 (204-244)||(34052296-34052336)
chr7 (206-244)||(10936584-10936622)
chr7 (206-244)||(30259180-30259218)
chr7 (206-240)||(31231633-31231667)
chr7 (206-244)||(31231730-31231768)
chr7 (206-244)||(38528526-38528564)
chr7 (204-244)||(40596799-40596839)
chr7 (212-252)||(47237534-47237574)
chr7 (209-244)||(3953156-3953191)
chr7 (209-244)||(35665655-35665690)
chr7 (206-245)||(38883334-38883373)
chr7 (206-240)||(24836138-24836172)
chr7 (210-244)||(29277861-29277895)
chr7 (206-240)||(35339297-35339331)
chr7 (206-244)||(35665730-35665768)
chr7 (206-244)||(38528409-38528447)
chr7 (206-244)||(38883240-38883278)
chr7 (210-240)||(48103483-48103513)
chr7 (206-247)||(12142211-12142252)
chr7 (206-239)||(33721846-33721879)
chr7 (204-240)||(10398437-10398473)
chr7 (46-94)||(20331425-20331473)
[»] chr5 (12 HSPs)
chr5 (206-252)||(8364736-8364782)
chr5 (206-241)||(20464018-20464053)
chr5 (206-244)||(24397360-24397398)
chr5 (206-245)||(15855956-15855995)
chr5 (206-245)||(16473068-16473107)
chr5 (206-245)||(35420631-35420670)
chr5 (206-244)||(15855862-15855900)
chr5 (206-244)||(16472974-16473012)
chr5 (206-240)||(20476549-20476583)
chr5 (206-244)||(35420726-35420764)
chr5 (78-111)||(22651156-22651189)
chr5 (215-244)||(37655265-37655294)
[»] scaffold0122 (1 HSPs)
scaffold0122 (206-244)||(45853-45891)
[»] chr8 (14 HSPs)
chr8 (206-244)||(15882219-15882257)
chr8 (206-252)||(38520037-38520083)
chr8 (209-244)||(33100667-33100702)
chr8 (206-252)||(4035760-4035806)
chr8 (206-252)||(8210342-8210388)
chr8 (206-240)||(15882319-15882353)
chr8 (210-252)||(17426736-17426778)
chr8 (206-244)||(23940919-23940957)
chr8 (206-240)||(24741842-24741876)
chr8 (206-244)||(29781073-29781111)
chr8 (206-244)||(37114257-37114295)
chr8 (206-240)||(40891131-40891165)
chr8 (199-252)||(10778669-10778722)
chr8 (45-101)||(17746956-17747012)
[»] chr6 (17 HSPs)
chr6 (206-244)||(885404-885442)
chr6 (206-244)||(3369004-3369042)
chr6 (206-244)||(7808723-7808761)
chr6 (206-244)||(8091081-8091119)
chr6 (206-240)||(14393682-14393716)
chr6 (206-244)||(21380055-21380093)
chr6 (206-242)||(4890597-4890633)
chr6 (206-245)||(11687162-11687201)
chr6 (209-244)||(20501820-20501855)
chr6 (51-109)||(7208209-7208267)
chr6 (52-109)||(7227160-7227218)
chr6 (206-244)||(11687257-11687295)
chr6 (206-244)||(14393580-14393618)
chr6 (206-244)||(15546651-15546689)
chr6 (206-244)||(18998231-18998269)
chr6 (206-244)||(20501725-20501763)
chr6 (206-240)||(21379960-21379994)
[»] chr4 (17 HSPs)
chr4 (206-244)||(1298931-1298969)
chr4 (206-252)||(18417676-18417722)
chr4 (204-244)||(56552078-56552118)
chr4 (206-240)||(530688-530722)
chr4 (206-244)||(530783-530821)
chr4 (206-252)||(23928673-23928719)
chr4 (206-252)||(24969650-24969696)
chr4 (206-252)||(42274599-42274645)
chr4 (206-244)||(52824258-52824296)
chr4 (209-244)||(13204399-13204434)
chr4 (209-252)||(27434632-27434675)
chr4 (209-252)||(52587419-52587462)
chr4 (206-240)||(18417775-18417809)
chr4 (210-244)||(20435254-20435288)
chr4 (206-240)||(24915813-24915847)
chr4 (206-240)||(27434728-27434762)
chr4 (206-240)||(55107642-55107676)
[»] chr3 (44 HSPs)
chr3 (206-244)||(12838096-12838134)
chr3 (206-244)||(25488455-25488493)
chr3 (206-244)||(25561030-25561068)
chr3 (46-125)||(17628064-17628143)
chr3 (206-244)||(21969271-21969309)
chr3 (206-244)||(21991707-21991745)
chr3 (206-252)||(26906473-26906519)
chr3 (206-252)||(36278862-36278908)
chr3 (206-252)||(39850451-39850497)
chr3 (206-252)||(43639188-43639234)
chr3 (206-252)||(44611487-44611533)
chr3 (206-244)||(45487818-45487856)
chr3 (209-244)||(5529913-5529948)
chr3 (206-245)||(10441277-10441316)
chr3 (206-245)||(36657452-36657491)
chr3 (206-244)||(1476665-1476703)
chr3 (206-240)||(3970510-3970544)
chr3 (206-244)||(4072388-4072426)
chr3 (206-244)||(8831759-8831797)
chr3 (206-244)||(10017133-10017171)
chr3 (206-244)||(10117534-10117572)
chr3 (206-240)||(10117629-10117663)
chr3 (206-244)||(10254587-10254625)
chr3 (206-240)||(10254687-10254721)
chr3 (206-244)||(10441372-10441410)
chr3 (206-244)||(12789625-12789663)
chr3 (206-240)||(12789724-12789758)
chr3 (206-240)||(13078182-13078216)
chr3 (206-240)||(21969176-21969210)
chr3 (206-240)||(21991612-21991646)
chr3 (206-240)||(22176227-22176261)
chr3 (206-240)||(25446368-25446402)
chr3 (206-244)||(32237508-32237546)
chr3 (206-244)||(35368568-35368606)
chr3 (210-244)||(36329294-36329328)
chr3 (206-244)||(36657547-36657585)
chr3 (206-244)||(36822779-36822817)
chr3 (210-244)||(36822874-36822908)
chr3 (206-244)||(39850363-39850401)
chr3 (206-240)||(45487917-45487951)
chr3 (206-244)||(45713017-45713055)
chr3 (206-240)||(50099552-50099586)
chr3 (211-244)||(42105497-42105530)
chr3 (204-244)||(20366703-20366743)
[»] chr1 (33 HSPs)
chr1 (46-108)||(17775292-17775354)
chr1 (206-244)||(42561409-42561447)
chr1 (206-241)||(50162656-50162691)
chr1 (206-252)||(2854638-2854684)
chr1 (206-244)||(5189488-5189526)
chr1 (206-244)||(9978166-9978204)
chr1 (206-244)||(19797095-19797133)
chr1 (206-244)||(19955025-19955063)
chr1 (206-252)||(23698608-23698654)
chr1 (206-244)||(27926366-27926404)
chr1 (206-252)||(48954320-48954366)
chr1 (206-244)||(49285089-49285127)
chr1 (209-240)||(3607751-3607782)
chr1 (209-244)||(3607843-3607878)
chr1 (46-101)||(10014699-10014754)
chr1 (209-244)||(15324648-15324683)
chr1 (209-252)||(51276801-51276844)
chr1 (206-240)||(1387896-1387930)
chr1 (206-244)||(4299509-4299547)
chr1 (45-111)||(11343581-11343647)
chr1 (45-111)||(11501601-11501667)
chr1 (206-244)||(14387129-14387167)
chr1 (206-240)||(27240943-27240977)
chr1 (210-252)||(27241030-27241072)
chr1 (206-240)||(27928317-27928351)
chr1 (206-244)||(27928412-27928450)
chr1 (206-244)||(36880625-36880663)
chr1 (206-240)||(42561314-42561348)
chr1 (206-244)||(47940685-47940723)
chr1 (206-244)||(50627150-50627188)
chr1 (209-246)||(28823217-28823254)
chr1 (188-245)||(48645015-48645072)
chr1 (187-240)||(26208543-26208598)
[»] scaffold0163 (2 HSPs)
scaffold0163 (206-244)||(2054-2092)
scaffold0163 (210-240)||(1962-1992)
[»] scaffold0107 (1 HSPs)
scaffold0107 (206-252)||(51082-51128)
[»] chr2 (15 HSPs)
chr2 (206-252)||(9281453-9281499)
chr2 (206-244)||(16705752-16705790)
chr2 (206-244)||(23835895-23835933)
chr2 (206-244)||(24101946-24101984)
chr2 (206-244)||(34490570-34490608)
chr2 (206-244)||(45408644-45408682)
chr2 (209-244)||(9933683-9933718)
chr2 (209-244)||(20892906-20892941)
chr2 (206-244)||(1924095-1924133)
chr2 (206-244)||(2818685-2818723)
chr2 (206-244)||(20892999-20893037)
chr2 (206-240)||(24101851-24101885)
chr2 (206-244)||(34455904-34455942)
chr2 (206-242)||(22269838-22269874)
chr2 (218-246)||(37340997-37341025)
[»] scaffold0595 (2 HSPs)
scaffold0595 (205-240)||(5823-5858)
scaffold0595 (210-244)||(5724-5758)
[»] scaffold0188 (2 HSPs)
scaffold0188 (206-240)||(7204-7238)
scaffold0188 (206-247)||(7105-7146)
[»] scaffold0137 (1 HSPs)
scaffold0137 (206-252)||(10135-10181)
[»] scaffold0069 (1 HSPs)
scaffold0069 (206-244)||(26424-26462)


Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 1072085 - 1072270
Alignment:
Q  30 caaagatattttaccttgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaacatggtgattggtttgattct 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  1072085 caaagatattttaccttgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttaattcaacatggtgattggtttgattct 1072184  T
Q  130 gatataggttgttcttctaacaacttctttgggtgttctctagaacataatattacaaaggaaaaaacttgtgtatttccttaggt 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  1072185 gatataggttgttcttctaacaacttctttgggtgttctttagaacataatattacaaaggaaaaaacttgtgtatttctttaggt 1072270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 30 - 252
Target Start/End: Original strand, 7954823 - 7955046
Alignment:
Q  30 caaagatattttaccttgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaacatggtgattggtttgattct 129  Q
    |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  7954823 caaagatattttaccttgttgatgaaagtcaaaatatctttctcaaggtgatgttttaatgataacaaacttaattgaacattgtgattgatttgattct 7954922  T
Q  130 gatataggttgttcttctaacaacttctttgggtgttctctagaacataatattacaaaggaaaaaact-tgtgtatttccttaggtgctttttgtatgg 228  Q
     ||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  | ||| |||||||||| |||||||||||||||    
T  7954923 aatataggctgttcttctaacaacttctttgggttttctttagaacataatattacaaaggaaaaacttatgtttatttccttatgtgctttttgtatgg 7955022  T
Q  229 ttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||| |||||||    
T  7955023 ttcttaactaaaaatacatttttt 7955046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 34052296 - 34052336
Alignment:
Q  204 atttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  34052296 atttccttaggtgcttttcgtatggttcttaactaaaaata 34052336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 10936622 - 10936584
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  10936622 ttccttaggtgcttttcgtatggttcttaactaaaaata 10936584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 30259218 - 30259180
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30259218 ttccttgggtgctttttgtatggttcttaactaaaaata 30259180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 31231633 - 31231667
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||||||||    
T  31231633 ttccttaggtgctttttgtatggttcttaactaaa 31231667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 31231768 - 31231730
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  31231768 ttccttaggtgcttttcgtatggttcttaactaaaaata 31231730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 38528564 - 38528526
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  38528564 ttccttaggtgcttttcgtatggttcttaactaaaaata 38528526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 40596839 - 40596799
Alignment:
Q  204 atttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  40596839 atttctttaggtgttttttgtatggttcttaactaaaaata 40596799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 47237574 - 47237534
Alignment:
Q  212 aggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  47237574 aggtgcttttcgtatggttcttaactaaaaatacatttttt 47237534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 3953191 - 3953156
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||| ||||||||||||||||||||||||||||    
T  3953191 cttaggtactttttgtatggttcttaactaaaaata 3953156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 35665655 - 35665690
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  35665655 cttaggtgcttttcgtatggttcttaactaaaaata 35665690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 38883373 - 38883334
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  38883373 ttccttagatgcttttcgtatggttcttaactaaaaatat 38883334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 24836172 - 24836138
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  24836172 ttccttaggtgcttttcgtatggttcttaactaaa 24836138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 29277861 - 29277895
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||| ||||||||||||||||||||||||||||    
T  29277861 ttaggtactttttgtatggttcttaactaaaaata 29277895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 35339297 - 35339331
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  35339297 ttccttaggtgcttttcgtatggttcttaactaaa 35339331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 35665768 - 35665730
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  35665768 ttccttaggtgcttttcgtatggtttttaactaaaaata 35665730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 38528409 - 38528447
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  38528409 ttccttaaatgctttttgtatggttcttaactaaaaata 38528447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 38883240 - 38883278
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  38883240 ttccttagatgcttttcgtatggttcttaactaaaaata 38883278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 48103513 - 48103483
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||||    
T  48103513 ttaggtgctttttgtatggttcttaactaaa 48103483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 12142211 - 12142252
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatat 247  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  12142211 ttccttacgtgctttgggtatggttcttaactaaaaatatat 12142252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 33721846 - 33721879
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaa 239  Q
    |||||||||||||||| |||||||||||||||||    
T  33721846 ttccttaggtgcttttcgtatggttcttaactaa 33721879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 10398473 - 10398437
Alignment:
Q  204 atttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||  ||||||||||||||||||||||||||    
T  10398473 atttccttatatgctttttgtatggttcttaactaaa 10398437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 20331425 - 20331473
Alignment:
Q  46 tgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataa 94  Q
    ||||||||||||||| || |||||||| | | |||||||||||||||||    
T  20331425 tgttgaggaaaatcacaaaatccttctgatgttgatgttttaatgataa 20331473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 8364782 - 8364736
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  8364782 ttccttaggtgctttttgtatggttcttaactaaaaatataattttt 8364736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 20464018 - 20464053
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaa 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  20464018 ttccttaggtgctttttgtatggttcttaactaaaa 20464053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 24397398 - 24397360
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  24397398 ttccttaggtgcttttcgtatggttcttaactaaaaata 24397360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 15855995 - 15855956
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  15855995 ttccttagatgcttttcgtatggttcttaactaaaaatat 15855956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 16473107 - 16473068
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  16473107 ttccttagatgcttttcgtatggttcttaactaaaaatat 16473068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 35420631 - 35420670
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  35420631 ttccttagatgcttttcgtatggttcttaactaaaaatat 35420670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 15855862 - 15855900
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  15855862 ttccttagatgcttttcgtatggttcttaactaaaaata 15855900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 16472974 - 16473012
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  16472974 ttccttagatgcttttcgtatggttcttaactaaaaata 16473012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 20476583 - 20476549
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  20476583 ttccttaggtgcttttcgtatggttcttaactaaa 20476549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 35420764 - 35420726
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  35420764 ttccttagatgcttttcgtatggttcttaactaaaaata 35420726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 22651156 - 22651189
Alignment:
Q  78 tgatgttttaatgataacaaacttatttgaacat 111  Q
    |||||||||| |||||||||||||||||||||||    
T  22651156 tgatgttttattgataacaaacttatttgaacat 22651189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 37655294 - 37655265
Alignment:
Q  215 tgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||||||||||||||||    
T  37655294 tgctttttgtatggttcttaactaaaaata 37655265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 45853 - 45891
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  45853 ttccttaggtgctttttgtatggttcttaactaaaaata 45891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 15882219 - 15882257
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15882219 ttccttaggtgctttttgtatggttcttaactaaaaata 15882257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 38520037 - 38520083
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  38520037 ttccttagttgcttttcgtatggttcttaactaaaaatatatatttt 38520083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 33100667 - 33100702
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  33100667 cttaggtgcttttcgtatggttcttaactaaaaata 33100702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 4035760 - 4035806
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||| |||||||||| ||||||| ||||||||||||||||| ||||    
T  4035760 ttcctcaggtgcttttcgtatggtacttaactaaaaatatatatttt 4035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 8210342 - 8210388
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||| ||||| |||||||||||| |||||| ||||    
T  8210342 ttccttaggtgcttttcgtatgattcttaactaaatatatatatttt 8210388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 15882353 - 15882319
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  15882353 ttccttaggtgcttttcgtatggttcttaactaaa 15882319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 17426778 - 17426736
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||    
T  17426778 ttaggtgcttttcgtatggttcttaactaaaaatgtatatttt 17426736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 23940957 - 23940919
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  23940957 ttccttaggtgcttttcgtatggtttttaactaaaaata 23940919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 24741842 - 24741876
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  24741842 ttccttaggtgcttttcgtatggttcttaactaaa 24741876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 29781111 - 29781073
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  29781111 ttccttagatgcttttcgtatggttcttaactaaaaata 29781073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 37114257 - 37114295
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  37114257 ttccttaggtgcttttcgtatggttcttaattaaaaata 37114295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 40891165 - 40891131
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  40891165 ttccttaggtgcttttcgtatggttcttaactaaa 40891131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 10778669 - 10778722
Alignment:
Q  199 tgtgtatttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||| |||||||||   |||||| |||||||||||||||||||||| |||||||    
T  10778669 tgtgcatttccttacacgcttttcgtatggttcttaactaaaaatacatttttt 10778722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 17746956 - 17747012
Alignment:
Q  45 ttgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaactt 101  Q
    ||||| |||||||||| || || ||||| ||| |||||||| |||||||||||||||    
T  17746956 ttgttaaggaaaatcacaaaattcttcttaagttgatgtttcaatgataacaaactt 17747012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 885404 - 885442
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  885404 ttccttaggtgctttttgtatggttcttaactaaaaata 885442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 3369004 - 3369042
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  3369004 ttccttaggtgcttttcgtatggttcttaactaaaaata 3369042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 7808761 - 7808723
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  7808761 ttccttaggtgcttttcgtatggttcttaactaaaaata 7808723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 8091081 - 8091119
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  8091081 ttccttaggtgcttttcgtatggttcttaactaaaaata 8091119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 14393716 - 14393682
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||||||||    
T  14393716 ttccttaggtgctttttgtatggttcttaactaaa 14393682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 21380093 - 21380055
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21380093 ttccttaggtgcttttcgtatggttcttaactaaaaata 21380055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 4890633 - 4890597
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaa 242  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4890633 ttccttaggtgcttttcgtatggttcttaactaaaaa 4890597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 11687162 - 11687201
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  11687162 ttccttagatgcttttcgtatggttcttaactaaaaatat 11687201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 20501855 - 20501820
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20501855 cttaggtgcttttcgtatggttcttaactaaaaata 20501820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 7208209 - 7208267
Alignment:
Q  51 aggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaac 109  Q
    |||||||||| || || ||||| ||| |||| |||||||||||||||| ||||||||||    
T  7208209 aggaaaatcacaaaattcttcttaagttgattttttaatgataacaaatttatttgaac 7208267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 7227160 - 7227218
Alignment:
Q  52 ggaaaatcaaaata-tccttctcaaggtgatgttttaatgataacaaacttatttgaac 109  Q
    |||||||||||| | | ||||| ||| |||| |||||||||||||||||||||||||||    
T  7227160 ggaaaatcaaaaaaattcttcttaagttgattttttaatgataacaaacttatttgaac 7227218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 11687295 - 11687257
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  11687295 ttccttagatgcttttcgtatggttcttaactaaaaata 11687257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 14393580 - 14393618
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  14393580 ttccttaggtgcttttcgtatgattcttaactaaaaata 14393618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 15546651 - 15546689
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| || |||||||||||||||||||||||||||    
T  15546651 ttccttagttgttttttgtatggttcttaactaaaaata 15546689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 18998269 - 18998231
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  18998269 ttccttaggtgcttttcgtatggttcttaattaaaaata 18998231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 20501725 - 20501763
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  20501725 ttccttaggtgtttttcgtatggttcttaactaaaaata 20501763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 21379960 - 21379994
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  21379960 ttccttaggtgcttttcgtatggttcttaactaaa 21379994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 1298931 - 1298969
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1298931 ttccttaggtgctttttgtatggttcttaactaaaaata 1298969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 18417676 - 18417722
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  18417676 ttccttaggtgcttttcgtatggttcttaactaaaaatatatatttt 18417722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 56552078 - 56552118
Alignment:
Q  204 atttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  56552078 atttccttaggtgctttttgtatggttctcaactaaaaata 56552118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 530688 - 530722
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||||||||    
T  530688 ttccttaggtgctttttgtatggttcttaactaaa 530722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 530821 - 530783
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  530821 ttccttaggtgcttttcgtatggttcttaactaaaaata 530783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 23928719 - 23928673
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||  ||||| ||||||||||||||||||||||||    
T  23928719 ttccttaggtgctttgcgtatgattcttaactaaaaatatatttttt 23928673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 24969696 - 24969650
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||| |||| ||||||||||||||||| |||||||    
T  24969696 ttccttaggtgcttttcgtatagttcttaactaaaaatacatttttt 24969650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 42274645 - 42274599
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||||||||| |||| ||||||||||||||||||||||||| ||||    
T  42274645 ttccttaggtgtttttcgtatggttcttaactaaaaatatatatttt 42274599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 52824258 - 52824296
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  52824258 ttccttaggtgcttttcgtatggttcttaactaaaaata 52824296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 13204399 - 13204434
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13204399 cttaggtactttttgtatggttcttaactaaaaata 13204434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 27434632 - 27434675
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||| ||||||||||||| ||||||||||||||||| |||||||    
T  27434632 cttatgtgctttttgtatagttcttaactaaaaatacatttttt 27434675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 52587462 - 52587419
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||||||||||| |||||||||||||||||| ||||| |||||    
T  52587462 cttaggtgcttttcgtatggttcttaactaaatatataattttt 52587419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 18417809 - 18417775
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||| ||||    
T  18417809 ttccttaggtgctttttgtatggttcttaattaaa 18417775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 20435288 - 20435254
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  20435288 ttaggtgcttttcgtatggttcttaactaaaaata 20435254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 24915813 - 24915847
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  24915813 ttccttaggtgcttttcgtatggttcttaactaaa 24915847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 27434762 - 27434728
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  27434762 ttccttaggtgcttttcgtatggttcttaactaaa 27434728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 55107676 - 55107642
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||| ||||||    
T  55107676 ttccttaggtgctttttgtatggttctttactaaa 55107642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 12838096 - 12838134
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12838096 ttccttaggtgctttttgtatggttcttaactaaaaata 12838134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 25488493 - 25488455
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25488493 ttccttaggtgctttttgtatggttcttaactaaaaata 25488455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 25561030 - 25561068
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25561030 ttccttaggtgctttttgtatggttcttaactaaaaata 25561068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 17628064 - 17628143
Alignment:
Q  46 tgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaacatggtgattggtttga 125  Q
    ||||||||||||| | || |||||||| ||| |||| ||||||||||| |||||||| |||||||| || ||| ||||||    
T  17628064 tgttgaggaaaataacaaaatccttcttaagttgatattttaatgatagcaaacttaattgaacatagttattagtttga 17628143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 21969309 - 21969271
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21969309 ttccttaggtgcttttcgtatggttcttaactaaaaata 21969271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 21991745 - 21991707
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  21991745 ttccttaggtgcttttcgtatggttcttaactaaaaata 21991707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 26906473 - 26906519
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  26906473 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 26906519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 36278908 - 36278862
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  36278908 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 36278862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 39850497 - 39850451
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  39850497 ttccttaggtgcttttcgtatgattcttaactaaaaatatatatttt 39850451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 43639234 - 43639188
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  43639234 ttccttaggtgcttttcgtatgattcttaactaaaaatatatatttt 43639188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 44611533 - 44611487
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||||    
T  44611533 ttccttaggtgttttttgtatggtttttaactaaaaatatatatttt 44611487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 45487818 - 45487856
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  45487818 ttccttaggtgcttttcgtatggttcttaactaaaaata 45487856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 5529913 - 5529948
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  5529913 cttaggtgcttttcgtatggttcttaactaaaaata 5529948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 10441277 - 10441316
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  10441277 ttccttaggtgcttttggtatgattcttaactaaaaatat 10441316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 36657452 - 36657491
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  36657452 ttccttagatgcttttcgtatggttcttaactaaaaatat 36657491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 1476703 - 1476665
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  1476703 ttccttaggtgcttttcatatggttcttaactaaaaata 1476665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 3970510 - 3970544
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  3970510 ttccttaggtgcttttcgtatggttcttaactaaa 3970544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 4072426 - 4072388
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  4072426 ttccttaggtgtttttcgtatggttcttaactaaaaata 4072388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 8831759 - 8831797
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  8831759 ttccttaggtgcttttcgtatggttctaaactaaaaata 8831797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 10017133 - 10017171
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  10017133 ttccttaggtgcttttcatatggttcttaactaaaaata 10017171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 10117534 - 10117572
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  10117534 ttccttaggtgcttttcatatggttcttaactaaaaata 10117572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 10117663 - 10117629
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  10117663 ttccttaggtgcttttcgtatggttcttaactaaa 10117629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 10254587 - 10254625
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  10254587 ttccttaggtgcttttcatatggttcttaactaaaaata 10254625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 10254721 - 10254687
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  10254721 ttccttaggtgcttttcgtatggttcttaactaaa 10254687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 10441410 - 10441372
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  10441410 ttccttaggtgcttttggtacggttcttaactaaaaata 10441372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 12789625 - 12789663
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  12789625 ttccttaggtgtttttcgtatggttcttaactaaaaata 12789663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 12789758 - 12789724
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||| ||||    
T  12789758 ttccttaggtgctttttgtatggttcttaattaaa 12789724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 13078182 - 13078216
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  13078182 ttccttaggtgcttttcgtatggttcttaactaaa 13078216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 21969176 - 21969210
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  21969176 ttccttaggtgcttttcgtatggttcttaactaaa 21969210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 21991612 - 21991646
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  21991612 ttccttaggtgcttttcgtatggttcttaactaaa 21991646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 22176261 - 22176227
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    ||||||| |||||||||||||||||||||||||||    
T  22176261 ttccttatgtgctttttgtatggttcttaactaaa 22176227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 25446402 - 25446368
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  25446402 ttccttaggtgcttttcgtatggttcttaactaaa 25446368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 32237546 - 32237508
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  32237546 ttccttaggtgcttttcgtatggttcttaattaaaaata 32237508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 35368568 - 35368606
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  35368568 ttccttatgtgcttttcgtatggttcttaactaaaaata 35368606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 36329328 - 36329294
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  36329328 ttaggtgcttttcgtatggttcttaactaaaaata 36329294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 36657585 - 36657547
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  36657585 ttccttagatgcttttcgtatggttcttaactaaaaata 36657547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 36822779 - 36822817
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  36822779 ttccttagctgcttttcgtatggttcttaactaaaaata 36822817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 36822908 - 36822874
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  36822908 ttaggtgcttttcgtatggttcttaactaaaaata 36822874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 39850363 - 39850401
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  39850363 ttccttaggtgtttttcgtatggttcttaactaaaaata 39850401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 45487951 - 45487917
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  45487951 ttccttaggtgcttttcgtatggttcttaactaaa 45487917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 45713055 - 45713017
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  45713055 ttccttaggtgcttttcgtatggttctaaactaaaaata 45713017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 50099586 - 50099552
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  50099586 ttccttaggtgcttttcgtatggttcttaactaaa 50099552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 42105530 - 42105497
Alignment:
Q  211 taggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||| |||||||||||||||||||||||||||    
T  42105530 taggtgttttttgtatggttcttaactaaaaata 42105497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 20366703 - 20366743
Alignment:
Q  204 atttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||| || |||| ||||||||||||||||||||||    
T  20366703 atttccttagatgtttttcgtatggttcttaactaaaaata 20366743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 17775292 - 17775354
Alignment:
Q  46 tgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaa 108  Q
    ||||||||||||||| || |||||||| ||| |||||||||| |||||||||||||| |||||    
T  17775292 tgttgaggaaaatcacaaaatccttcttaagttgatgttttactgataacaaacttaattgaa 17775354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 42561447 - 42561409
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42561447 ttccttaggtgctttttgtatggttcttaactaaaaata 42561409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 50162691 - 50162656
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaa 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  50162691 ttccttaggtgctttttgtatggttcttaactaaaa 50162656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 2854684 - 2854638
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  2854684 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 2854638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 5189488 - 5189526
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  5189488 ttccttaggtgcttttcgtatggttcttaactaaaaata 5189526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 9978204 - 9978166
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  9978204 ttccttaggtgcttttcgtatggttcttaactaaaaata 9978166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 19797133 - 19797095
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  19797133 ttccttaggtgcttttcgtatggttcttaactaaaaata 19797095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 19955063 - 19955025
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  19955063 ttccttaggtactttttgtatggttcttaactaaaaata 19955025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 23698654 - 23698608
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  23698654 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 23698608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 27926404 - 27926366
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  27926404 ttccttaggtgcttttcgtatggttcttaactaaaaata 27926366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 48954366 - 48954320
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  48954366 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 48954320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 49285127 - 49285089
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  49285127 ttccttaggtgcttttcgtatggttcttaactaaaaata 49285089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 3607751 - 3607782
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaa 240  Q
    ||||||||||||||||||||||||||||||||    
T  3607751 cttaggtgctttttgtatggttcttaactaaa 3607782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 3607878 - 3607843
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  3607878 cttaggtgcttttcgtatggttcttaactaaaaata 3607843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 10014754 - 10014699
Alignment:
Q  46 tgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaactt 101  Q
    ||||||||||||||| || |||||||| ||| || | |||||||||||||||||||    
T  10014754 tgttgaggaaaatcacaaaatccttcttaagttggtattttaatgataacaaactt 10014699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 15324648 - 15324683
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15324648 cttaggtgcttttcgtatggttcttaactaaaaata 15324683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 51276844 - 51276801
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||||||||||| |||||||||||| ||||||||| |||||||    
T  51276844 cttaggtgcttttcgtatggttcttagctaaaaatacatttttt 51276801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 1387930 - 1387896
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  1387930 ttccttaggtgcttttcgtatggttcttaactaaa 1387896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 4299547 - 4299509
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  4299547 ttccttaggtgtttttcgtatggttcttaactaaaaata 4299509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 11343647 - 11343581
Alignment:
Q  45 ttgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaacat 111  Q
    |||||||||| ||||| || ||| |||| ||  ||||||||||| || |||||||||||||||||||    
T  11343647 ttgttgaggataatcacaaaatctttcttaaattgatgttttaacgacaacaaacttatttgaacat 11343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 11501667 - 11501601
Alignment:
Q  45 ttgttgaggaaaatcaaaatatccttctcaaggtgatgttttaatgataacaaacttatttgaacat 111  Q
    |||||||||| ||||| || ||| |||| ||  ||||||||||| || |||||||||||||||||||    
T  11501667 ttgttgaggataatcacaaaatctttcttaaattgatgttttaacgacaacaaacttatttgaacat 11501601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 14387167 - 14387129
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  14387167 ttccttaggtgtttttcgtatggttcttaactaaaaata 14387129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 27240943 - 27240977
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  27240943 ttccttaggtgcttttcgtatggttcttaactaaa 27240977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 27241072 - 27241030
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||||  ||||||||||||||||||||||||| ||||    
T  27241072 ttaggtgctttgcgtatggttcttaactaaaaatatatatttt 27241030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 27928317 - 27928351
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    ||||||| |||||||||||||||||||||||||||    
T  27928317 ttccttatgtgctttttgtatggttcttaactaaa 27928351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 27928450 - 27928412
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  27928450 ttccttaggtgtttttcgtatggttcttaactaaaaata 27928412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 36880663 - 36880625
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  36880663 ttccttagatgcttttcgtatggttcttaactaaaaata 36880625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 42561314 - 42561348
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  42561314 ttccttaggtgcttttcgtatggttcttaactaaa 42561348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 47940723 - 47940685
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  47940723 ttccttaggtgtttttcgtatggttcttaactaaaaata 47940685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 50627150 - 50627188
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  50627150 ttccttagatgcttttcgtatggttcttaactaaaaata 50627188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 246
Target Start/End: Complemental strand, 28823254 - 28823217
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaatata 246  Q
    |||||| | |||||||||||||||||||||||||||||    
T  28823254 cttaggagttttttgtatggttcttaactaaaaatata 28823217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 48645015 - 48645072
Alignment:
Q  188 aggaaaaaacttgtgtatttccttaggtgctttttgtatggttcttaactaaaaatat 245  Q
    |||| |||||||  |||| | ||||||||||||| ||||| |||||||||||||||||    
T  48645015 aggagaaaactttggtatattcttaggtgcttttcgtatgcttcttaactaaaaatat 48645072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 26208598 - 26208543
Alignment:
Q  187 aaggaaaaaacttgtgtat--ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    ||||| ||||||| |||||  |||||||||||||||| |||||||||| |||||||    
T  26208598 aaggagaaaacttatgtataattccttaggtgcttttcgtatggttctgaactaaa 26208543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 2092 - 2054
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  2092 ttccttaggtgctttttatatggttcttaactaaaaata 2054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Original strand, 1962 - 1992
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||||||||||||||||||    
T  1962 ttaggtgctttttgtatggttcttaactaaa 1992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 51082 - 51128
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  51082 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 51128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 9281499 - 9281453
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9281499 ttccttaggtccttttcgtatggttcttaactaaaaatatatatttt 9281453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 16705752 - 16705790
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  16705752 ttccttaggtgcttttcgtatggttcttaactaaaaata 16705790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 23835895 - 23835933
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23835895 ttccttaggtgcttttcgtatggttcttaactaaaaata 23835933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 24101984 - 24101946
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  24101984 ttccttaggtgcttttcgtatggttcttaactaaaaata 24101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 34490608 - 34490570
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  34490608 ttccttaggtgcttttcgtatggttcttaactaaaaata 34490570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 45408644 - 45408682
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  45408644 ttccttaggtgttttttgtatggttcttaactaaaaata 45408682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 9933718 - 9933683
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9933718 cttaggtgcttttcgtatggttcttaactaaaaata 9933683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 244
Target Start/End: Original strand, 20892906 - 20892941
Alignment:
Q  209 cttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||||| ||||||||||||||||||||||    
T  20892906 cttaggtgcttttcgtatggttcttaactaaaaata 20892941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 1924133 - 1924095
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  1924133 ttccttaggtgtttttcgtatggttcttaactaaaaata 1924095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 2818685 - 2818723
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  2818685 ttccttaggtgcttttcgtatgattcttaactaaaaata 2818723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 20893037 - 20892999
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  20893037 ttccttaggtgcttttcgtatgattcttaactaaaaata 20892999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 24101851 - 24101885
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  24101851 ttccttaggtgcttttcgtatggttcttaactaaa 24101885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 34455904 - 34455942
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  34455904 ttccttaggtgcttttcgtatggttcttaattaaaaata 34455942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 22269874 - 22269838
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaa 242  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  22269874 ttccttagatgcttttcgtatggttcttaactaaaaa 22269838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 37340997 - 37341025
Alignment:
Q  218 tttttgtatggttcttaactaaaaatata 246  Q
    |||||||||||||||||||||||||||||    
T  37340997 tttttgtatggttcttaactaaaaatata 37341025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 5858 - 5823
Alignment:
Q  205 tttccttaggtgctttttgtatggttcttaactaaa 240  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5858 tttccttaggtgcttttcgtatggttcttaactaaa 5823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0595; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 5724 - 5758
Alignment:
Q  210 ttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||| ||||||||||||||||||||||    
T  5724 ttaggtgcttttcgtatggttcttaactaaaaata 5758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 7238 - 7204
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaa 240  Q
    |||||||||||||||| ||||||||||||||||||    
T  7238 ttccttaggtgcttttcgtatggttcttaactaaa 7204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 7105 - 7146
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatat 247  Q
    ||||||||||| |||| ||||| |||||||||||||||||||    
T  7105 ttccttaggtgtttttcgtatgattcttaactaaaaatatat 7146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 10135 - 10181
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaatatatttttt 252  Q
    ||||||||||| |||  ||||||||||||||||||||||||| ||||    
T  10135 ttccttaggtgttttgcgtatggttcttaactaaaaatatatatttt 10181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 26424 - 26462
Alignment:
Q  206 ttccttaggtgctttttgtatggttcttaactaaaaata 244  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  26424 ttccttaggtgcttttcgtatggttattaactaaaaata 26462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 862 times since January 2019
Visitors: 3657