View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0549_low_77 (Length: 251)
Name: NF0549_low_77
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0549_low_77 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 56067869 - 56068113
Alignment:
| Q |
7 |
ggagcagagaattactgcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagacatcgaaagaagc |
106 |
Q |
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| T |
56067869 |
ggagcagagaattactgcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccgacgagagcaaagatatcgaaagaagc |
56067968 |
T |
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| Q |
107 |
taaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggt |
206 |
Q |
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| T |
56067969 |
taaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggt |
56068068 |
T |
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| Q |
207 |
gatgatcttgtgcgggccatgactacacttggctttgaagaatat |
251 |
Q |
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| T |
56068069 |
gatgatcttgtgtgggccatgactacacttggctttgaagaatat |
56068113 |
T |
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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 9722623 - 9722847
Alignment:
| Q |
23 |
gcaagaaaggcttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagacatcgaaagaagctaaagaaacgatgcaa |
122 |
Q |
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| T |
9722623 |
gcaagataggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagtacaa |
9722722 |
T |
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| Q |
123 |
gagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgatcttgtgcggg |
222 |
Q |
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| T |
9722723 |
gagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaagaggaaaacaatcaacggtgatgatcttctttggg |
9722822 |
T |
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| Q |
223 |
ccatgactacacttggctttgaaga |
247 |
Q |
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| T |
9722823 |
ctatgacaactcttggatttgaaga |
9722847 |
T |
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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 245
Target Start/End: Original strand, 38281641 - 38281787
Alignment:
| Q |
99 |
aaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaa |
198 |
Q |
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| T |
38281641 |
aaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtcagagagaaaaaaggaaaacaa |
38281740 |
T |
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| Q |
199 |
taaacggtgatgatcttgtgcgggccatgactacacttggctttgaa |
245 |
Q |
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| T |
38281741 |
ttaatggtgatgatcttctttgggctatgacaacacttggttttgaa |
38281787 |
T |
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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 41866545 - 41866690
Alignment:
| Q |
42 |
atagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagacatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttca |
141 |
Q |
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| T |
41866545 |
atagcaaacgtgagcagaataatgaagaaggcgttaccagcaaacgcgaagatctcgaaagatgctaaggaaacggtgcaggaatgtgtatcggagttca |
41866644 |
T |
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| Q |
142 |
taagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaa |
187 |
Q |
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| T |
41866645 |
tcagcttcatcaccggtgaagcttccgataagtgtcagagagagaa |
41866690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 212
Target Start/End: Complemental strand, 39786441 - 39786325
Alignment:
| Q |
96 |
tcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaaga |
195 |
Q |
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|||||||| ||||||||||| |||||||||||||| |||||||| | || || |||| |||||||||||||| |||||||| || |||||| | |||| |
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| T |
39786441 |
tcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaaga |
39786342 |
T |
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| Q |
196 |
caataaacggtgatgat |
212 |
Q |
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| T |
39786341 |
cagtgaatggtgatgat |
39786325 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 23569695 - 23569873
Alignment:
| Q |
34 |
ttcttcccatagcaaacgtgggtaggatcatgaagaaagcgttaccggcgagagcaaagacatcgaaagaagctaaagaaacgatgcaagagtgtgtatc |
133 |
Q |
| |
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||||||| ||||||||||| | ||||||||||| ||||| |||| |||| || |||| || ||||| || || ||||| | ||||||||||| || |
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| T |
23569695 |
ttcttccaatagcaaacgtaagcaggatcatgaaaaaagcactaccagcgaacgcgaagatctcaaaagacgcaaaggaaacagttcaagagtgtgtttc |
23569794 |
T |
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| Q |
134 |
agagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
212 |
Q |
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| T |
23569795 |
agagttcatcagcttcatcaccggcgaagcctccgataagtgtcaacgtgagaagcggaagacgatcaacggcgatgat |
23569873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 22139957 - 22140004
Alignment:
| Q |
165 |
tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
212 |
Q |
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||||| |||||||||| ||||||||||||||| || |||||||||||| |
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| T |
22139957 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat |
22140004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 40539347 - 40539394
Alignment:
| Q |
165 |
tctgaaaagtgtcagaaagagaagaggaagacaataaacggtgatgat |
212 |
Q |
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||||| |||||||||| ||||||||||||||| || |||||||||||| |
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| T |
40539347 |
tctgataagtgtcagagagagaagaggaagacgattaacggtgatgat |
40539394 |
T |
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