View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_78 (Length: 251)

Name: NF0549_low_78
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_78
NF0549_low_78
[»] chr7 (8 HSPs)
chr7 (14-240)||(1072371-1072596)
chr7 (85-164)||(7955177-7955256)
chr7 (182-234)||(10398435-10398487)
chr7 (109-164)||(25705361-25705416)
chr7 (183-241)||(3953046-3953104)
chr7 (183-241)||(29277946-29278004)
chr7 (182-222)||(33355166-33355206)
chr7 (14-46)||(7955328-7955360)
[»] chr2 (1 HSPs)
chr2 (110-164)||(27867553-27867607)
[»] scaffold0043 (1 HSPs)
scaffold0043 (109-162)||(57827-57879)
[»] chr4 (2 HSPs)
chr4 (183-241)||(13204486-13204544)
chr4 (110-164)||(15788535-15788589)
[»] chr1 (2 HSPs)
chr1 (183-251)||(50162542-50162608)
chr1 (110-162)||(74011-74062)
[»] chr8 (1 HSPs)
chr8 (113-161)||(41510355-41510403)
[»] chr5 (3 HSPs)
chr5 (182-233)||(10304773-10304824)
chr5 (183-239)||(10132365-10132421)
chr5 (209-241)||(35276322-35276354)
[»] chr3 (2 HSPs)
chr3 (109-160)||(20097506-20097556)
chr3 (183-241)||(35368842-35368900)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 1072596 - 1072371
Alignment:
Q  14 aggggtttagtatagtatataacaataataaattagggtggcatgaaatatcgcataataataaatagttcgtagagaacgatcgcactttcctacaaaa 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1072596 aggggtttagcatagtatataacaataataaattagggtggcatgaaatatcgcataataataaatagttcgtagagaacgatcgcactttcctacaaaa 1072497  T
Q  114 ataacaatcgacatggaacacacatatacgaaagaaatatagtagaaagtgnnnnnnnntatttggttcaaaacttaggtgcatttccttatatattttt 213  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||| ||||| |||||||    
T  1072496 ataacaatcgatatggaacacacatatacgaaagaaatatagtagaaagtg-aaaaaaatatttggttcaaaatttaggtgcattttcttatgtattttt 1072398  T
Q  214 tgtatggtttataactaaattcaccat 240  Q
    ||||||||| |||||||||||||||||    
T  1072397 tgtatggttcataactaaattcaccat 1072371  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 164
Target Start/End: Complemental strand, 7955256 - 7955177
Alignment:
Q  85 gtagagaacgatcgcactttcctacaaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaaagtg 164  Q
    ||||| |||||||| |||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7955256 gtagataacgatcgaactttccagcaaaaataacaatcgacatggaacacacatatacaaaagaaatatagtagaaagtg 7955177  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 10398487 - 10398435
Alignment:
Q  182 caaaacttaggtgcatttccttatatattttttgtatggtttataactaaatt 234  Q
    ||||||||||||||||||||||||||  |||||||||||||  ||||||||||    
T  10398487 caaaacttaggtgcatttccttatatgctttttgtatggttcttaactaaatt 10398435  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 25705416 - 25705361
Alignment:
Q  109 caaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaaagtg 164  Q
    |||||||||||||| |||| |||||||||||||| || |||||| |||||||||||    
T  25705416 caaaaataacaatcaacatagaacacacatatacaaatgaaataaagtagaaagtg 25705361  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 3953046 - 3953104
Alignment:
Q  183 aaaacttaggtgcatttccttatatattttttgtatggtttataactaaattcaccatg 241  Q
    ||||||||||| || |||||||| || |||| ||||||||| |||||||||||||||||    
T  3953046 aaaacttaggtacaattccttatgtacttttcgtatggtttttaactaaattcaccatg 3953104  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 29278004 - 29277946
Alignment:
Q  183 aaaacttaggtgcatttccttatatattttttgtatggtttataactaaattcaccatg 241  Q
    ||||||||||| || |||||||||||||||  ||||| ||| |||||||||||||||||    
T  29278004 aaaacttaggtacaattccttatatattttccgtatgatttttaactaaattcaccatg 29277946  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 33355166 - 33355206
Alignment:
Q  182 caaaacttaggtgcatttccttatatattttttgtatggtt 222  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  33355166 caaaacttaggtgcatttccttatgtactttttgtatggtt 33355206  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 7955360 - 7955328
Alignment:
Q  14 aggggtttagtatagtatataacaataataaat 46  Q
    |||||||||| ||||||||||||||||||||||    
T  7955360 aggggtttagcatagtatataacaataataaat 7955328  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 27867553 - 27867607
Alignment:
Q  110 aaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaaagtg 164  Q
    ||||||| ||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  27867553 aaaaatagcaatccacatggaacacacatatatgaaagaactatagtagaaagtg 27867607  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 57879 - 57827
Alignment:
Q  109 caaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaaag 162  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  57879 caaaaataacattcgacatggaacacacatata-gaaagaattatagtagaaag 57827  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 13204544 - 13204486
Alignment:
Q  183 aaaacttaggtgcatttccttatatattttttgtatggtttataactaaattcaccatg 241  Q
    ||||||||||| || |||||||| || |||| ||||||||| |||||||||||||||||    
T  13204544 aaaacttaggtacaattccttatgtacttttcgtatggtttttaactaaattcaccatg 13204486  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 15788535 - 15788589
Alignment:
Q  110 aaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaaagtg 164  Q
    ||||||| ||||| |||||||||||||||| | |||||| |||||||||||||||    
T  15788535 aaaaatagcaatccacatggaacacacataaatgaaagatatatagtagaaagtg 15788589  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 50162542 - 50162608
Alignment:
Q  183 aaaacttaggtgcatttccttatatattttttgtatggtttataactaaattcaccatgtgattttctc 251  Q
    ||||||||||| || |||||||  ||||||||||||||||| ||| ||||||||||  |||||||||||    
T  50162542 aaaacttaggtacaattccttaggtattttttgtatggtttttaattaaattcacc--gtgattttctc 50162608  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 74011 - 74062
Alignment:
Q  110 aaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaaag 162  Q
    ||||||||||||| |||||||||||||||||| |||| || | ||||||||||    
T  74011 aaaaataacaatccacatggaacacacatata-gaaataattgtagtagaaag 74062  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 41510355 - 41510403
Alignment:
Q  113 aataacaatcgacatggaacacacatatacgaaagaaatatagtagaaa 161  Q
    |||||||||||||||| || |||| |||| |||||||||||||||||||    
T  41510355 aataacaatcgacatgaaatacacgtatatgaaagaaatatagtagaaa 41510403  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 10304824 - 10304773
Alignment:
Q  182 caaaacttaggtgcatttccttatatattttttgtatggtttataactaaat 233  Q
    ||||||||||||||| ||||||| || ||||||||||| ||| |||||||||    
T  10304824 caaaacttaggtgcaattccttagatgttttttgtatgatttttaactaaat 10304773  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 10132421 - 10132365
Alignment:
Q  183 aaaacttaggtgcatttccttatatattttttgtatggtttataactaaattcacca 239  Q
    ||||||||| | || |||||||| | ||||||||||||||  |||||||||||||||    
T  10132421 aaaacttagatacaattccttatgtgttttttgtatggttcttaactaaattcacca 10132365  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 35276322 - 35276354
Alignment:
Q  209 ttttttgtatggtttataactaaattcaccatg 241  Q
    |||||||||||||||||||||||||| ||||||    
T  35276322 ttttttgtatggtttataactaaatttaccatg 35276354  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 20097556 - 20097506
Alignment:
Q  109 caaaaataacaatcgacatggaacacacatatacgaaagaaatatagtagaa 160  Q
    |||||||||||||| ||||| |||||||||||| ||||||| ||||||||||    
T  20097556 caaaaataacaatccacatgaaacacacatata-gaaagaattatagtagaa 20097506  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 35368900 - 35368842
Alignment:
Q  183 aaaacttaggtgcatttccttatatattttttgtatggtttataactaaattcaccatg 241  Q
    ||||||||||| || || ||||| | ||||| ||||||||| |||||||||||||||||    
T  35368900 aaaacttaggtacaatttcttatgtgtttttcgtatggtttttaactaaattcaccatg 35368842  T

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