View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0549_low_9 (Length: 590)

Name: NF0549_low_9
Description: NF0549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0549_low_9
NF0549_low_9
[»] chr7 (17 HSPs)
chr7 (376-516)||(35109691-35109831)
chr7 (376-516)||(38265229-38265369)
chr7 (376-516)||(41151172-41151313)
chr7 (377-516)||(21577091-21577230)
chr7 (387-516)||(16059356-16059485)
chr7 (383-516)||(34721834-34721967)
chr7 (376-516)||(12472121-12472261)
chr7 (383-498)||(37095209-37095324)
chr7 (377-516)||(38405147-38405286)
chr7 (377-503)||(245257-245383)
chr7 (376-516)||(45278452-45278592)
chr7 (387-516)||(18116947-18117076)
chr7 (389-514)||(11216771-11216896)
chr7 (387-516)||(48176399-48176529)
chr7 (383-515)||(23028684-23028816)
chr7 (383-484)||(28407540-28407637)
chr7 (383-426)||(39234853-39234896)
[»] chr2 (25 HSPs)
chr2 (377-516)||(45136963-45137102)
chr2 (377-514)||(17136389-17136526)
chr2 (377-516)||(40156040-40156179)
chr2 (377-516)||(25987654-25987794)
chr2 (376-515)||(21637898-21638037)
chr2 (377-515)||(10745225-10745363)
chr2 (377-516)||(2754044-2754183)
chr2 (394-516)||(6672803-6672925)
chr2 (383-516)||(36836328-36836461)
chr2 (376-516)||(5039420-5039560)
chr2 (377-515)||(36380125-36380263)
chr2 (383-516)||(44650393-44650526)
chr2 (377-515)||(26690155-26690293)
chr2 (377-494)||(558432-558549)
chr2 (378-513)||(3200884-3201019)
chr2 (377-516)||(2357069-2357207)
chr2 (377-516)||(7860139-7860278)
chr2 (386-515)||(30372682-30372811)
chr2 (383-514)||(33066592-33066723)
chr2 (384-515)||(13047156-13047282)
chr2 (398-483)||(21487181-21487266)
chr2 (387-491)||(4553561-4553666)
chr2 (383-433)||(2098825-2098875)
chr2 (446-501)||(20961496-20961551)
chr2 (438-478)||(30477240-30477280)
[»] chr3 (26 HSPs)
chr3 (383-516)||(8400855-8400988)
chr3 (383-516)||(7417798-7417931)
chr3 (377-516)||(50823698-50823837)
chr3 (377-516)||(50852023-50852162)
chr3 (383-516)||(35198765-35198898)
chr3 (383-515)||(22855888-22856020)
chr3 (376-516)||(43334046-43334186)
chr3 (383-505)||(52545332-52545454)
chr3 (387-516)||(34824556-34824685)
chr3 (387-515)||(55468000-55468129)
chr3 (376-501)||(29635883-29636009)
chr3 (384-487)||(22371729-22371832)
chr3 (383-469)||(37330606-37330692)
chr3 (377-494)||(19872476-19872593)
chr3 (384-469)||(30534902-30534987)
chr3 (420-515)||(48077977-48078072)
chr3 (383-469)||(37454743-37454829)
chr3 (376-456)||(25910658-25910738)
chr3 (376-516)||(50725989-50726129)
chr3 (376-516)||(50786719-50786859)
chr3 (376-502)||(42876229-42876355)
chr3 (382-477)||(30203652-30203744)
chr3 (383-484)||(25589253-25589347)
chr3 (376-427)||(773666-773717)
chr3 (376-459)||(39438821-39438903)
chr3 (389-434)||(31297529-31297574)
[»] chr8 (21 HSPs)
chr8 (376-516)||(19723311-19723451)
chr8 (376-515)||(11404002-11404141)
chr8 (377-516)||(4840140-4840279)
chr8 (376-514)||(29767190-29767326)
chr8 (383-514)||(32296638-32296769)
chr8 (387-498)||(17095568-17095679)
chr8 (377-516)||(22711509-22711648)
chr8 (377-513)||(28739554-28739690)
chr8 (377-483)||(36261679-36261785)
chr8 (376-515)||(41553286-41553425)
chr8 (404-487)||(21355004-21355087)
chr8 (378-516)||(11610280-11610418)
chr8 (376-470)||(11909415-11909509)
chr8 (383-513)||(30682842-30682971)
chr8 (382-483)||(43288105-43288206)
chr8 (417-501)||(24475029-24475113)
chr8 (440-514)||(27881044-27881118)
chr8 (440-514)||(28021225-28021299)
chr8 (377-444)||(27879553-27879620)
chr8 (377-444)||(28019734-28019801)
chr8 (377-504)||(44741914-44742038)
[»] chr5 (10 HSPs)
chr5 (376-516)||(17064323-17064463)
chr5 (382-513)||(20983001-20983132)
chr5 (383-516)||(37976546-37976683)
chr5 (383-475)||(41910865-41910957)
chr5 (389-483)||(31673863-31673956)
chr5 (383-499)||(5009416-5009531)
chr5 (377-427)||(35237052-35237102)
chr5 (388-506)||(39162859-39162977)
chr5 (464-515)||(35237103-35237154)
chr5 (426-483)||(18303352-18303409)
[»] chr1 (17 HSPs)
chr1 (387-516)||(30054445-30054574)
chr1 (377-516)||(20014458-20014597)
chr1 (376-515)||(30370052-30370191)
chr1 (376-516)||(45324006-45324146)
chr1 (376-515)||(12025182-12025321)
chr1 (387-515)||(21090116-21090244)
chr1 (377-498)||(22024121-22024242)
chr1 (378-516)||(4573379-4573517)
chr1 (385-516)||(30850841-30850972)
chr1 (377-487)||(14498072-14498182)
chr1 (376-503)||(33763246-33763373)
chr1 (376-490)||(33762532-33762646)
chr1 (394-472)||(35371755-35371833)
chr1 (396-504)||(44438562-44438670)
chr1 (376-457)||(35618034-35618115)
chr1 (376-444)||(17015192-17015260)
chr1 (470-516)||(15034455-15034501)
[»] chr4 (26 HSPs)
chr4 (376-516)||(46494390-46494530)
chr4 (377-516)||(51066493-51066632)
chr4 (384-515)||(36192542-36192673)
chr4 (377-516)||(51713958-51714097)
chr4 (377-516)||(32139164-32139303)
chr4 (383-516)||(7173584-7173717)
chr4 (383-516)||(30970383-30970516)
chr4 (377-516)||(50905748-50905887)
chr4 (383-516)||(39863777-39863910)
chr4 (414-516)||(8740448-8740550)
chr4 (377-487)||(29576444-29576554)
chr4 (376-488)||(55231715-55231827)
chr4 (376-501)||(2570216-2570341)
chr4 (377-516)||(47626986-47627127)
chr4 (377-478)||(676766-676867)
chr4 (383-460)||(22304090-22304167)
chr4 (377-490)||(41523423-41523536)
chr4 (387-515)||(2294719-2294841)
chr4 (376-483)||(4080544-4080651)
chr4 (376-505)||(50399634-50399763)
chr4 (386-505)||(51279035-51279154)
chr4 (413-514)||(22423378-22423479)
chr4 (378-449)||(23084459-23084530)
chr4 (395-452)||(37990606-37990663)
chr4 (382-481)||(40012548-40012646)
chr4 (387-430)||(51066240-51066283)
[»] chr6 (9 HSPs)
chr6 (377-516)||(35163743-35163882)
chr6 (376-495)||(20685346-20685465)
chr6 (377-514)||(19686820-19686957)
chr6 (377-516)||(2711733-2711866)
chr6 (382-494)||(17948702-17948814)
chr6 (378-516)||(14505519-14505655)
chr6 (394-489)||(15070152-15070247)
chr6 (462-516)||(14496352-14496406)
chr6 (413-491)||(24336640-24336718)
[»] scaffold0021 (1 HSPs)
scaffold0021 (383-515)||(107691-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (409-514)||(6994-7099)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 7e-69; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 35109831 - 35109691
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109831 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 35109732  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  35109731 ctccaaaggcactagtggggctcgaacccgggttctctcgg 35109691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 38265229 - 38265369
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265229 ggttacataaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 38265328  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38265329 ctccaaaggcactagcggggctcgaacccaggttctctcgg 38265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 41151313 - 41151172
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttac-aaaggtaattacatttacctc 474  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41151313 ggttacaaaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctc 41151214  T
Q  475 cctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  41151213 cctccaaagacactagcggggctcgaacccgggttctctcgg 41151172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 21577091 - 21577230
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21577091 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccc 21577190  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  21577191 tccaaaggcattagtggggctcgaacccgggttctctcgg 21577230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 387 - 516
Target Start/End: Original strand, 16059356 - 16059485
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  487 ctagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcgg 16059485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 34721967 - 34721834
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||| ||| ||||||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcgg 34721834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 12472261 - 12472121
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  12472261 ggttacacaaagtttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctcc 12472162  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  12472161 ctccaaaggcactagtggggctcgaacccgggttctctcgg 12472121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 383 - 498
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  483 ggcactagcggggctc 498  Q
    | ||||||||||||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 38405147 - 38405286
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  38405147 gttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccc 38405246  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||| ||||||||| ||  |||||||||    
T  38405247 tccaaaggcactagcgaggctcgaactcgaattctctcgg 38405286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 377 - 503
Target Start/End: Original strand, 245257 - 245383
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  245257 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccc 245356  T
Q  477 tccaaaggcactagcggggctcgaacc 503  Q
    ||||| |||||||||||||||||||||    
T  245357 tccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 45278592 - 45278452
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| |||    
T  45278592 ggttacaaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcc 45278493  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  45278492 cttcaaaggcactagcggggctcgaacccgggttatctcgg 45278452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 387 - 516
Target Start/End: Original strand, 18116947 - 18117076
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  487 ctagcggggctcgaacccgggttctctcgg 516  Q
    |||||| |||||||||||||||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcgg 18117076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 389 - 514
Target Start/End: Complemental strand, 11216896 - 11216771
Alignment:
Q  389 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcact 488  Q
    |||| ||||||| ||| ||||| ||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  489 agcggggctcgaacccgggttctctc 514  Q
    |  |||||||||||||||||||||||    
T  11216796 aatggggctcgaacccgggttctctc 11216771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 387 - 516
Target Start/End: Complemental strand, 48176529 - 48176399
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggc-agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 485  Q
    |||||| |||||||||||||||||||||||||||  |||||| |||||| |||||||| | |||||||||| ||| |||||||||||||| |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  486 actagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||| |||||||||    
T  48176429 actagcggggctcgaacccggattctctcgg 48176399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 383 - 515
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    ||||||||||  |||| |||||||| | ||||| |||| ||||||| |||||||| ||||| | |||||| |||||||||||||||||| |||||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  483 ggcactagcggggctcgaacccgggttctctcg 515  Q
    |||| ||| || | |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 383 - 484
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||||||| ||||||||  |    |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 39234896 - 39234853
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcaggga 426  Q
    |||||||| | |||||||||||||||||||||||| ||||||||    
T  39234896 aaaatttttgggtgaggggatggtgccccagtccatggcaggga 39234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 3e-68; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 45136963 - 45137102
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45136963 gttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 45137062  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45137063 tccaaaggcactagcggggctcgaacccgggttctctcgg 45137102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 377 - 514
Target Start/End: Complemental strand, 17136526 - 17136389
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17136526 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 17136427  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctc 514  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17136426 tccaaaggcactaacggggctcgaacccgggttctctc 17136389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 40156179 - 40156040
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156179 gttacaaaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 40156080  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  40156079 tccaaaggcactagcggggctcgaacccggattctctcgg 40156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 25987654 - 25987794
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa-gaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25987654 gttacaaaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctcc 25987753  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  25987754 ctccaaaggcactagcggggctcgaacccgagttctctcgg 25987794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 376 - 515
Target Start/End: Complemental strand, 21638037 - 21637898
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  21638037 ggttacaaaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctcc 21637938  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21637937 ctccaaaggcactagcggggctcaaacccgggttctctcg 21637898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 377 - 515
Target Start/End: Original strand, 10745225 - 10745363
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  10745225 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccc 10745324  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    || |||||||||||||||||||| |||||||||||||||    
T  10745325 tctaaaggcactagcggggctcggacccgggttctctcg 10745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 2754044 - 2754183
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2754044 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2754143  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||| ||| ||| |||||| ||||||||||||||    
T  2754144 tccaaaggcattagtgggactcgaatccgggttctctcgg 2754183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 394 - 516
Target Start/End: Original strand, 6672803 - 6672925
Alignment:
Q  394 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgg 493  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  6672803 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcgg 6672902  T
Q  494 ggctcgaacccgggttctctcgg 516  Q
    |||| ||||||||||||||||||    
T  6672903 ggcttgaacccgggttctctcgg 6672925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 383 - 516
Target Start/End: Original strand, 36836328 - 36836461
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||| |||||| ||||||| |||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcgg 36836461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 5039560 - 5039420
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5039560 ggttacaaaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctcc 5039461  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||| ||| |||||||||| ||||||||||| ||||||||||    
T  5039460 ctctaaaagcactagcggagctcgaacccgagttctctcgg 5039420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 377 - 515
Target Start/End: Original strand, 36380125 - 36380263
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36380125 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccc 36380224  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    ||||||||||||||||||| || |||||| ||| |||||    
T  36380225 tccaaaggcactagcggggttcaaacccgagttttctcg 36380263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 44650526 - 44650393
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||| ||| |||||||  |||||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcgg 44650393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 377 - 515
Target Start/End: Complemental strand, 26690293 - 26690155
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||||||    
T  26690293 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccc 26690194  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    |||||| ||||||||||| ||||||||| | ||||||||    
T  26690193 tccaaaagcactagcgggactcgaacccagattctctcg 26690155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 558432 - 558549
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  558432 gttacaaaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccc 558531  T
Q  477 tccaaaggcactagcggg 494  Q
    ||||||||||||||||||    
T  558532 tccaaaggcactagcggg 558549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 378 - 513
Target Start/End: Complemental strand, 3201019 - 3200884
Alignment:
Q  378 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 477  Q
    ||||||||||||||| | |||| ||||||||||||||| ||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  3201019 ttacaaaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccct 3200920  T
Q  478 ccaaaggcactagcggggctcgaacccgggttctct 513  Q
    ||||||||||||||| |||||||| || ||||||||    
T  3200919 ccaaaggcactagcgaggctcgaatccaggttctct 3200884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 2357069 - 2357207
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||| |||| |||||| |||| |||||||||||||||    
T  2357069 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccc 2357167  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||| ||||| ||  |||||||||||||||||||||    
T  2357168 tccaaaggtactagtggaactcgaacccgggttctctcgg 2357207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 7860139 - 7860278
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |||  ||||||||||||||    
T  7860139 gttacaaaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccc 7860238  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  7860239 tccaaaggcactagcggggctcaaacccaggttctctcgg 7860278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 386 - 515
Target Start/End: Original strand, 30372682 - 30372811
Alignment:
Q  386 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 485  Q
    ||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  486 actagcggggctcgaacccgggttctctcg 515  Q
    |||||||| |||||||||| || |||||||    
T  30372782 actagcggagctcgaacccaggatctctcg 30372811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 514
Target Start/End: Complemental strand, 33066723 - 33066592
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    ||||||||||  |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  483 ggcactagcggggctcgaacccgggttctctc 514  Q
    | |||||| |  |||||||||||| |||||||    
T  33066623 gacactagtgaagctcgaacccggattctctc 33066592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 384 - 515
Target Start/End: Original strand, 13047156 - 13047282
Alignment:
Q  384 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 483  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||   |||||||||| ||||||||||||||||||    
T  13047156 aaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctccctccaaag 13047252  T
Q  484 gcactagcggggctcgaacccgggttctctcg 515  Q
      ||  ||||||||||||||||| ||||||||    
T  13047253 --acatgcggggctcgaacccggattctctcg 13047282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 21487266 - 21487181
Alignment:
Q  398 ggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 483  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  21487266 ggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaag 21487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 387 - 491
Target Start/End: Original strand, 4553561 - 4553666
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc-cctccaaaggc 485  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||||||||| ||||||||| ||| ||| ||||||||| ||||||||  |    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaac 4553660  T
Q  486 actagc 491  Q
    ||||||    
T  4553661 actagc 4553666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 383 - 433
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagacctt 433  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  446 gcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaa 501  Q
    ||||||||||| | | |||||||||||||||||||| ||||||||||| |||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 478
Target Start/End: Original strand, 30477240 - 30477280
Alignment:
Q  438 ctcaaagagcacttacaaaggtaattacatttacctccctc 478  Q
    ||||||||| ||||||||||||| ||| |||||||||||||    
T  30477240 ctcaaagagaacttacaaaggtatttagatttacctccctc 30477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 8400988 - 8400855
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcgg 8400855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 7417931 - 7417798
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417931 aaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 7417832  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||||||||    
T  7417831 ggcactagcggggctcgaacccgggttctctcgg 7417798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 50823837 - 50823698
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823837 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50823738  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||| |||| ||||||||||| |||||||||    
T  50823737 tccaaaggcactaacgggactcgaacccggattctctcgg 50823698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 50852023 - 50852162
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852023 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50852122  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||| |||| ||||||||||| |||||||||    
T  50852123 tccaaaggcactaacgggactcgaacccggattctctcgg 50852162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 35198898 - 35198765
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||| ||| |||||||||||||||||||||||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcgg 35198765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 383 - 515
Target Start/End: Complemental strand, 22856020 - 22855888
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22856020 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaa 22855921  T
Q  483 ggcactagcggggctcgaacccgggttctctcg 515  Q
    | ||||||||||||||||||| |||||||||||    
T  22855920 gacactagcggggctcgaacctgggttctctcg 22855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 43334046 - 43334186
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  43334046 ggttacaaaatttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctcc 43334145  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  43334146 ctcccaagacactagcggggctcgaactcgggttctctcgg 43334186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 383 - 505
Target Start/End: Complemental strand, 52545454 - 52545332
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  483 ggcactagcggggctcgaacccg 505  Q
    |||||||||||||||||||||||    
T  52545354 ggcactagcggggctcgaacccg 52545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 387 - 516
Target Start/End: Complemental strand, 34824685 - 34824556
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  487 ctagcggggctcgaacccgggttctctcgg 516  Q
    ||| |||| ||||||| | |||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcgg 34824556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 387 - 515
Target Start/End: Complemental strand, 55468129 - 55468000
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcggg-ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 485  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  486 actagcggggctcgaacccgggttctctcg 515  Q
    | ||| ||||||||||||||| ||||||||    
T  55468029 attagtggggctcgaacccggattctctcg 55468000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 501
Target Start/End: Complemental strand, 29636009 - 29635883
Alignment:
Q  376 ggttacaaaaattttagagtgaggggat-ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc 474  Q
    ||||||| ||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29636009 ggttacagaaattttagcgtgagggaattggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctc 29635910  T
Q  475 cctccaaaggcactagcggggctcgaa 501  Q
    ||| |||||||||||||| ||||||||    
T  29635909 ccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 384 - 487
Target Start/End: Original strand, 22371729 - 22371832
Alignment:
Q  384 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 483  Q
    ||||||||| |||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22371729 aaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaag 22371828  T
Q  484 gcac 487  Q
    ||||    
T  22371829 gcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 383 - 469
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 469  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 19872476 - 19872593
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||  ||||||| ||    
T  19872476 gttataaaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcc 19872575  T
Q  477 tccaaaggcactagcggg 494  Q
    ||||||||||| ||||||    
T  19872576 tccaaaggcacaagcggg 19872593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 384 - 469
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  384 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 469  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 420 - 515
Target Start/End: Original strand, 48077977 - 48078072
Alignment:
Q  420 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||| | |||||||||||| |||||||||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcg 48078072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 383 - 469
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 469  Q
    |||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 25910658 - 25910738
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 456  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  25910658 ggttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 50725989 - 50726129
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50725989 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50726088  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||| ||||| |||||||||||||||  |||||||||    
T  50726089 ctccaaagacactaacggggctcgaacccgaattctctcgg 50726129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 50786859 - 50786719
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50786859 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50786760  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||| ||||| |||||||||||||||  |||||||||    
T  50786759 ctccaaagacactaacggggctcgaacccgaattctctcgg 50786719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 376 - 502
Target Start/End: Complemental strand, 42876355 - 42876229
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||| ||| ||||| ||||| ||||||||||| ||||||||  ||||||||| |||  | |||||||||||||||||||||||||||||||||||||    
T  42876355 ggttacagaaaatttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctcc 42876256  T
Q  476 ctccaaaggcactagcggggctcgaac 502  Q
     || |||| ||||||  ||||||||||    
T  42876255 atctaaagacactagtcgggctcgaac 42876229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 382 - 477
Target Start/End: Original strand, 30203652 - 30203744
Alignment:
Q  382 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 477  Q
    |||| |||||||||||||||||||||||||||| |||| || |||| ||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  30203652 aaaatttttagagtgaggggatggtgccccagttcaagaca-ggaaaaccttcgagctcaaagaacatttacaaaggt--ttacatttacctccct 30203744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 383 - 484
Target Start/End: Complemental strand, 25589347 - 25589253
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||| |||||||| |||||||||||||       |||| |||||||||||||||| |||||| |||||||||||||| ||||||    
T  25589347 aaaattttagggtgaggggagggtgcccccgtccaaggcaggg-------tcggactcaaagagcacttactaaggtatttacatttacctccttccaaa 25589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 427
Target Start/End: Complemental strand, 773717 - 773666
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 427  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  773717 ggttacaaaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 459
Target Start/End: Original strand, 39438821 - 39438903
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggt 459  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||| || ||  | ||||| |||||||||||||    
T  39438821 ggttacaaaaattttagggtgaggg-atggtgccccagttcaaggtaggaaagacttttggatttaaagaacacttacaaaggt 39438903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 31297529 - 31297574
Alignment:
Q  389 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttc 434  Q
    |||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  31297529 ttagggtgagggcatggttccccagtccaaggcaaggaagaccttc 31297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 2e-66; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 19723451 - 19723311
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  19723451 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctcc 19723352  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19723351 ctccaaaggcactagcggggctcgaacccgggttctctcgg 19723311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 376 - 515
Target Start/End: Complemental strand, 11404141 - 11404002
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11404141 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 11404042  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    |||||||| |||||||| ||||||||||| ||||||||||    
T  11404041 ctccaaagacactagcgaggctcgaacccaggttctctcg 11404002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 4840279 - 4840140
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||||||    
T  4840279 gttacagaaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccc 4840180  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4840179 tccaaaggcactagcggggctcgaacccgggttctctcgg 4840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 376 - 514
Target Start/End: Complemental strand, 29767326 - 29767190
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  29767326 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcc 29767229  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctc 514  Q
    || |||||||||||||||||||||| |||||||||||||    
T  29767228 cttcaaaggcactagcggggctcgaccccgggttctctc 29767190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 383 - 514
Target Start/End: Original strand, 32296638 - 32296769
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  483 ggcactagcggggctcgaacccgggttctctc 514  Q
    ||||||||| ||||| ||||||||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctc 32296769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 387 - 498
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  487 ctagcggggctc 498  Q
    ||||||||||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 22711648 - 22711509
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22711648 gttacaaaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 22711549  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||| |||  || ||| |||||| ||||||||||    
T  22711548 tccaaaggcattagttggactcaaacccgagttctctcgg 22711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 377 - 513
Target Start/End: Original strand, 28739554 - 28739690
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    ||||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||    
T  28739554 gttacaaaatttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcc 28739653  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctct 513  Q
    |||||||||||||| |||||| |||||| ||||||||    
T  28739654 tccaaaggcactagtggggcttgaacccaggttctct 28739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 377 - 483
Target Start/End: Complemental strand, 36261785 - 36261679
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36261785 gttacaaaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 36261686  T
Q  477 tccaaag 483  Q
    |||||||    
T  36261685 tccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 376 - 515
Target Start/End: Complemental strand, 41553425 - 41553286
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | |    
T  41553425 ggttacaaaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttc 41553326  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    |||||||| || ||| ||| ||||||| ||||||||||||    
T  41553325 ctccaaagacattagtgggactcgaactcgggttctctcg 41553286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  404 ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 487  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 378 - 516
Target Start/End: Complemental strand, 11610418 - 11610280
Alignment:
Q  378 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 477  Q
    ||||||||||||||| ||||||||||||||||||||||||||  | | |||||||||||||| ||| ||||||||||||| || ||| ||||||||  ||    
T  11610418 ttacaaaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttct 11610319  T
Q  478 ccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||| |||||||| ||| | ||||||||    
T  11610318 ccaaaggcactagcgaggctcgaatccgagatctctcgg 11610280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 11909415 - 11909509
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattta 470  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  11909415 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 383 - 513
Target Start/End: Complemental strand, 30682971 - 30682842
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtgccc-agtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  483 ggcactagcggggctcgaacccgggttctct 513  Q
    ||||| || ||||||||||| |||| |||||    
T  30682872 ggcaccagtggggctcgaacacgggctctct 30682842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 382 - 483
Target Start/End: Complemental strand, 43288206 - 43288105
Alignment:
Q  382 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 481  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||    
T  43288206 aaaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaa 43288107  T
Q  482 ag 483  Q
    ||    
T  43288106 ag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 24475029 - 24475113
Alignment:
Q  417 aaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaa 501  Q
    |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaa 24475113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 27881044 - 27881118
Alignment:
Q  440 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctc 514  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 27881118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 28021225 - 28021299
Alignment:
Q  440 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctc 514  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 28021299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 27879553 - 27879620
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 444  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  27879553 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 377 - 444
Target Start/End: Original strand, 28019734 - 28019801
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 444  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  28019734 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 377 - 504
Target Start/End: Original strand, 44741914 - 44742038
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||| |||||| | || ||    ||||||||||||||| | | | ||| || || |    
T  44741914 gttacaaaaattt-agggtgaggggatggcaccccagtccaaggcaggtaagaccataggact--tggagcacttacaaagggattaatattaacttctc 44742010  T
Q  477 tccaaaggcactagcggggctcgaaccc 504  Q
    |||||||||||||||| |||||||||||    
T  44742011 tccaaaggcactagcgaggctcgaaccc 44742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 17064463 - 17064323
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  17064463 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctcc 17064364  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  17064363 ctccaaaggcactagcgaggctcgaacccgggttctctcgg 17064323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 382 - 513
Target Start/End: Original strand, 20983001 - 20983132
Alignment:
Q  382 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 481  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |||| |    
T  20983001 aaaatttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccga 20983100  T
Q  482 aggcactagcggggctcgaacccgggttctct 513  Q
    ||||||||||||||||||||||||| ||||||    
T  20983101 aggcactagcggggctcgaacccggattctct 20983132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 37976683 - 37976546
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattac----atttacctccctc 478  Q
    |||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||    ||||||||||||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  479 caaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcgg 37976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 41910957 - 41910865
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctcc 41910865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 389 - 483
Target Start/End: Complemental strand, 31673956 - 31673863
Alignment:
Q  389 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 483  Q
    |||| |||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| |||||| | |||||||| |||| ||||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcctctctccaaag 31673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 383 - 499
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||| ||||||| ||| ||||| ||||||| |||||||||||||  ||||||| || |||||||  || ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  483 ggcactagcggggctcg 499  Q
    | ||||| |||||||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 377 - 427
Target Start/End: Original strand, 35237052 - 35237102
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 427  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35237052 gttacagaaattttagagtgaggggatggtgcctcagtccaaggcagggaa 35237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 506
Target Start/End: Original strand, 39162859 - 39162977
Alignment:
Q  388 tttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttaca-aaggtaattacatttacct---ccctccaaag 483  Q
    ||||| |||| |||| |||||||||||||||||||  |||||||    ||||||||||||| ||||| |||||| ||||||||||||    ||||||| |    
T  39162859 tttagggtgatgggacggtgccccagtccaaggcacagaagacc----ggctcaaagagcatttacacaaggtatttacatttaccttcctcctccaagg 39162954  T
Q  484 gcactagcggggctcgaacccgg 506  Q
    |||||||  ||||||||||||||    
T  39162955 gcactagttgggctcgaacccgg 39162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 515
Target Start/End: Original strand, 35237103 - 35237154
Alignment:
Q  464 acatttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    |||||||||||||| ||||| ||||||||||||||||| || | ||||||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcg 35237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 18303352 - 18303409
Alignment:
Q  426 aagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 483  Q
    |||||||||||| | |||||||||||||||| ||| |||| ||||| | |||||||||    
T  18303352 aagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaag 18303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 387 - 516
Target Start/End: Original strand, 30054445 - 30054574
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  487 ctagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcgg 30054574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 20014597 - 20014458
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  20014597 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccc 20014498  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  20014497 tccaaaggtactagcgggactcgaacccgggttctctcgg 20014458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 376 - 515
Target Start/End: Original strand, 30370052 - 30370191
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370052 ggttacatgaattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 30370151  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    |||||||| |||||| ||||||||||||||| ||||||||    
T  30370152 ctccaaagacactagtggggctcgaacccggattctctcg 30370191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 376 - 516
Target Start/End: Complemental strand, 45324146 - 45324006
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  45324146 ggttgcaaaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctcc 45324047  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  45324046 ctccaaaagcactagcggggctggaacccaggttctctcgg 45324006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 376 - 515
Target Start/End: Complemental strand, 12025321 - 12025182
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |    
T  12025321 ggttacaaaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttc 12025222  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcg 515  Q
    ||||||||||||||  ||||||||||||| ||||||||||    
T  12025221 ctccaaaggcactaatggggctcgaacccaggttctctcg 12025182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 387 - 515
Target Start/End: Complemental strand, 21090244 - 21090116
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggca 21090145  T
Q  487 ctagcggggctcgaacccgggttctctcg 515  Q
    |||||||||||||||||||  ||||||||    
T  21090144 ctagcggggctcgaacccgaattctctcg 21090116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 377 - 498
Target Start/End: Complemental strand, 22024242 - 22024121
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcca 22024143  T
Q  477 tccaaaggcactagcggggctc 498  Q
    ||||||||||||||| ||||||    
T  22024142 tccaaaggcactagcagggctc 22024121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 378 - 516
Target Start/End: Complemental strand, 4573517 - 4573379
Alignment:
Q  378 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 477  Q
    ||||||||||||||| |||||||||| ||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4573517 ttacaaaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccct 4573418  T
Q  478 ccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||| || ||| |||||||||||||||||||||||||    
T  4573417 ccaaagacattagtggggctcgaacccgggttctctcgg 4573379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 385 - 516
Target Start/End: Original strand, 30850841 - 30850972
Alignment:
Q  385 aattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 484  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  485 cactagcggggctcgaacccgggttctctcgg 516  Q
    ||||| ||||||||||||||| ||||||||||    
T  30850941 cactaacggggctcgaacccgagttctctcgg 30850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 377 - 487
Target Start/End: Original strand, 14498072 - 14498182
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14498072 gttacaaaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccc 14498171  T
Q  477 tccaaaggcac 487  Q
    |||||||||||    
T  14498172 tccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 376 - 503
Target Start/End: Original strand, 33763246 - 33763373
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33763246 ggttacagaaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33763345  T
Q  476 ctccaaaggcactagcggggctcgaacc 503  Q
    ||| ||||||||||||||||||||||||    
T  33763346 ctctaaaggcactagcggggctcgaacc 33763373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 376 - 490
Target Start/End: Original strand, 33762532 - 33762646
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33762532 ggttacaaaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33762631  T
Q  476 ctccaaaggcactag 490  Q
    ||| |||||||||||    
T  33762632 ctctaaaggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 394 - 472
Target Start/End: Original strand, 35371755 - 35371833
Alignment:
Q  394 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacc 472  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35371755 gtgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 396 - 504
Target Start/End: Original strand, 44438562 - 44438670
Alignment:
Q  396 gaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgggg 495  Q
    ||||||||||| ||||||| ||||||||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||| |||||| |    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  496 ctcgaaccc 504  Q
    |||||||||    
T  44438662 ctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 376 - 457
Target Start/End: Complemental strand, 35618115 - 35618034
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaag 457  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35618115 ggttacaaaatttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag 35618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 376 - 444
Target Start/End: Complemental strand, 17015260 - 17015192
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 444  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17015260 ggttacataaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 15034501 - 15034455
Alignment:
Q  470 acctccctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcgg 15034455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 376 - 516
Target Start/End: Original strand, 46494390 - 46494530
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46494390 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 46494489  T
Q  476 ctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  46494490 ctccaaaggcactagtggggctcgaacccgggttctctcgg 46494530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 51066632 - 51066493
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51066632 gttacaaattttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccc 51066533  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  51066532 tccaaaggcactagcggagctcgaacccgagttctctcgg 51066493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 384 - 515
Target Start/End: Complemental strand, 36192673 - 36192542
Alignment:
Q  384 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 483  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  484 gcactagcggggctcgaacccgggttctctcg 515  Q
    ||||||| ||||||||||||||||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcg 36192542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 51713958 - 51714097
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  51713958 gttacaaaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctccc 51714057  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    | |||||||||||| |||||||||||||||||||||||||    
T  51714058 ttcaaaggcactagtggggctcgaacccgggttctctcgg 51714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 32139303 - 32139164
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||| ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32139303 gttataaaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccc 32139204  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||| ||||||||||| |||||||| |||||||||||    
T  32139203 tccaaagacactagcggggttcgaacccaggttctctcgg 32139164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 383 - 516
Target Start/End: Original strand, 7173584 - 7173717
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||| || |||||  |||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcgg 7173717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 383 - 516
Target Start/End: Original strand, 30970383 - 30970516
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||| | ||||||||||||| |||||||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcgg 30970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 377 - 516
Target Start/End: Complemental strand, 50905887 - 50905748
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||| |    
T  50905887 gttacaaaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctc 50905788  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  50905787 tccaaaggcactagcggggctcgaacccagattctctcgg 50905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 383 - 516
Target Start/End: Original strand, 39863777 - 39863910
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||| ||| | |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  483 ggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||||||  |||||||||||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcgg 39863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 414 - 516
Target Start/End: Complemental strand, 8740550 - 8740448
Alignment:
Q  414 tccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctct 513  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  514 cgg 516  Q
    |||    
T  8740450 cgg 8740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 377 - 487
Target Start/End: Complemental strand, 29576554 - 29576444
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  29576554 gttacaaaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccc 29576455  T
Q  477 tccaaaggcac 487  Q
    |||||||||||    
T  29576454 tccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 376 - 488
Target Start/End: Complemental strand, 55231827 - 55231715
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  55231827 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcc 55231728  T
Q  476 ctccaaaggcact 488  Q
    || ||||||||||    
T  55231727 cttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 376 - 501
Target Start/End: Complemental strand, 2570341 - 2570216
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| || | || ||| ||||||||||    
T  2570341 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctcc 2570242  T
Q  476 ctccaaaggcactagcggggctcgaa 501  Q
    |||||||||||| ||||| |||||||    
T  2570241 ctccaaaggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 47626986 - 47627127
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||| | |||||||| | ||| | ||||| |||||||||||||||    
T  47626986 gttacaaaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctccc 47627085  T
Q  477 tccaaaggcactagcgggg--ctcgaacccgggttctctcgg 516  Q
    | |||||||||||| ||||  |||||| ||||||||||||||    
T  47627086 ttcaaaggcactagtggggctctcgaatccgggttctctcgg 47627127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 377 - 478
Target Start/End: Complemental strand, 676867 - 676766
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||  || |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  676867 gttacaaaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccc 676768  T
Q  477 tc 478  Q
    ||    
T  676767 tc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 383 - 460
Target Start/End: Original strand, 22304090 - 22304167
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggta 460  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 377 - 490
Target Start/End: Complemental strand, 41523536 - 41523423
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    ||||||||| ||||||  ||| ||||||||| |||| ||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  41523536 gttacaaaatttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccc 41523437  T
Q  477 tccaaaggcactag 490  Q
    ||||||| ||||||    
T  41523436 tccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 387 - 515
Target Start/End: Original strand, 2294719 - 2294841
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 486  Q
    |||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||      |||||||||||||||| ||||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt------gtaattacatttaccttcctccaaaggca 2294812  T
Q  487 ctagcggggctcgaacccgggttctctcg 515  Q
    ||||||   |||||||||| |||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcg 2294841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 376 - 483
Target Start/End: Original strand, 4080544 - 4080651
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||  | ||||||||||||| ||| |||||| ||| |||||| ||| | ||||||||||| ||||||| ||||||||||||||||||    
T  4080544 ggttacaaaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctcc 4080643  T
Q  476 ctccaaag 483  Q
    ||||||||    
T  4080644 ctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 376 - 505
Target Start/End: Original strand, 50399634 - 50399763
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||| ||| ||||| ||||| ||||| |||||   ||||||| || |||||| ||  |||||||||| |||||||||||||| |||||||||||| |    
T  50399634 ggttacataaaatttagggtgagcggatgatgcccttatccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttc 50399733  T
Q  476 ctccaaaggcactagcggggctcgaacccg 505  Q
    ||||||  ||||||||||||||||||||||    
T  50399734 ctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 505
Target Start/End: Original strand, 51279035 - 51279154
Alignment:
Q  386 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 485  Q
    ||||||| ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctctaaaagc 51279134  T
Q  486 actagcggggctcgaacccg 505  Q
    | |||  |||||| ||||||    
T  51279135 attagtagggctcaaacccg 51279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 514
Target Start/End: Complemental strand, 22423479 - 22423378
Alignment:
Q  413 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctc 512  Q
    |||||| ||||||||||||||||  | |||||| |||||||||| ||| ||||||||||||||||||||||| |||| | ||||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  513 tc 514  Q
    ||    
T  22423379 tc 22423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 378 - 449
Target Start/End: Original strand, 23084459 - 23084530
Alignment:
Q  378 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcac 449  Q
    |||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  23084459 ttacaaaatttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 452
Target Start/End: Original strand, 37990606 - 37990663
Alignment:
Q  395 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 452  Q
    |||||| ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  37990606 tgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 382 - 481
Target Start/End: Complemental strand, 40012646 - 40012548
Alignment:
Q  382 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 481  Q
    ||||| ||||| ||||| ||| |||| || ||||||| | ||||||||||||  | ||||| ||||||| ||||||| | ||||||||||||||||||||    
T  40012646 aaaaaatttagtgtgagaggacggtgtcctagtccaacgtagggaagaccttatgactcaa-gagcactcacaaagggatttacatttacctccctccaa 40012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 430
Target Start/End: Complemental strand, 51066283 - 51066240
Alignment:
Q  387 ttttagagtgaggggatggtgccccagtccaaggcagggaagac 430  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  51066283 ttttagggtgaggggatggtgccccagttcaaggcagggaagac 51066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 4e-61; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 35163743 - 35163882
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35163743 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 35163842  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||||||| ||| ||||||||||||| |||||||||||    
T  35163843 tccaaaggcattagtggggctcgaaccctggttctctcgg 35163882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 376 - 495
Target Start/End: Complemental strand, 20685465 - 20685346
Alignment:
Q  376 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 475  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20685465 ggttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 20685366  T
Q  476 ctccaaaggcactagcgggg 495  Q
    ||||||||||||||||||||    
T  20685365 ctccaaaggcactagcgggg 20685346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 377 - 514
Target Start/End: Original strand, 19686820 - 19686957
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||| ||||||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19686820 gttacagaaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 19686919  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctc 514  Q
    | |||||||||||| ||||||||||||| |||||||||    
T  19686920 tacaaaggcactagaggggctcgaacccaggttctctc 19686957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 377 - 516
Target Start/End: Original strand, 2711733 - 2711866
Alignment:
Q  377 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 476  Q
    |||||||||||||||| ||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2711733 gttacaaaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2711826  T
Q  477 tccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    |||||| ||||||| |||||||||| || |||||| ||||    
T  2711827 tccaaaagcactagtggggctcgaatccaggttctatcgg 2711866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 382 - 494
Target Start/End: Complemental strand, 17948814 - 17948702
Alignment:
Q  382 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 481  Q
    ||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17948814 aaaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaa 17948715  T
Q  482 aggcactagcggg 494  Q
    || ||||||||||    
T  17948714 agacactagcggg 17948702  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 378 - 516
Target Start/End: Original strand, 14505519 - 14505655
Alignment:
Q  378 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 477  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||||||  | ||||||||||| ||||||||||||||||    
T  14505519 ttacaaaaattttag-gtgaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccct 14505616  T
Q  478 ccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||| ||||||||||||||||||  |||| ||||||||    
T  14505617 ccaaaagcactagcggggctcgaattcgggatctctcgg 14505655  T

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Target: chr6; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 394 - 489
Target Start/End: Complemental strand, 15070247 - 15070152
Alignment:
Q  394 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcacta 489  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||    
T  15070247 gtgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 462 - 516
Target Start/End: Complemental strand, 14496406 - 14496352
Alignment:
Q  462 ttacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 516  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 14496352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 413 - 491
Target Start/End: Complemental strand, 24336718 - 24336640
Alignment:
Q  413 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagc 491  Q
    ||||||||||||||||| |||| |||||||| | |||||||||| ||| ||||||||||||||||||||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagc 24336640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 383 - 515
Target Start/End: Original strand, 107691 - 107822
Alignment:
Q  383 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 482  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107691 aaaattttag-gtgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  483 ggcactagcggggctcgaacccgggttctctcg 515  Q
    |||||||||||||||||||| ||||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcg 107822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 409 - 514
Target Start/End: Original strand, 6994 - 7099
Alignment:
Q  409 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggt 508  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |    
T  6994 cccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggat 7093  T
Q  509 tctctc 514  Q
    ||||||    
T  7094 tctctc 7099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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