View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0550-Insertion-1 (Length: 642)

Name: NF0550-Insertion-1
Description: NF0550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0550-Insertion-1
NF0550-Insertion-1
[»] chr1 (2 HSPs)
chr1 (131-642)||(8176564-8177068)
chr1 (8-111)||(8176391-8176494)
[»] chr4 (4 HSPs)
chr4 (382-584)||(18846725-18846920)
chr4 (271-338)||(18846447-18846513)
chr4 (8-94)||(18845247-18845335)
chr4 (204-328)||(27793080-27793204)


Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 131 - 642
Target Start/End: Original strand, 8176564 - 8177068
Alignment:
Q  131 gaaatttcagaataataacatttactaggaaaaatatgacctcnnnnnnngtttatatttgagtccggagaaatacctgaacggttgctcgcaatccaaa 230  Q
    ||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8176564 gaaatttcagaataataacatttactaggaaaa-tatgacctctttttttgtttatatttgagtccggagaaatacctgaacggttgctcgcaatccaaa 8176662  T
Q  231 tgctttaactgcaattataatgttaggattcccagcccatttcattgatagttccataatcaattccttttcatcagtgctatacactttcattcctgcc 330  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8176663 tgctttaactgcaactataatgttaggattcccagcccatttcattgatagttccataatcaattccttttcatcagtgctatacactttcattcctg-c 8176761  T
Q  331 agccatattatataaatggatcaacacaattaacatttatcagtcaaaattatatttttact----gatagctatgtataccttgaaaagttggtggcaa 426  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  8176762 agccatattatataaatggatcaacacaattagcatttatcagtcaaaattatatttttactcatatatagctatgtataccttgaaaagttggtggcaa 8176861  T
Q  427 agagcccaaattaagttcttcaaattcaactgaatcaattttatactttggaatttgttccgcaataataggctttgctatagttcttgtagtcttgcaa 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8176862 agagcccaaattaagttcttcaaattcaactgaatcaattttatactttggaatttgttccgcaataataggctttgctatagttcttgtagtcttgcaa 8176961  T
Q  527 attgcctatatataacattcaaccaatttttgataccctttgaaaattgatattcaaaattaaatctcatagaaaatgtgtgcatatataccttgttcaa 626  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||     ||||||||||||||||||||||    |||||||||||||    
T  8176962 attgcctatatataacattcaaccaattgttgatactctttgaaaattgatattca-----aaatctcatagaaaatgtgtgc----ataccttgttcaa 8177052  T
Q  627 ataaggccacatacac 642  Q
    ||||||||||||||||    
T  8177053 ataaggccacatacac 8177068  T

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Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 8176391 - 8176494
Alignment:
Q  8 agagacacgtaaatattggcgaaacaaggaaaactaggaaccaaaggcttcaacattatgcgcggagaagcaaacacttgcaaatcaacaacctgcaatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8176391 agagacacgtaaatattggcgaaacaaggaaaactaggaaccaaaggcttcaacattatgcgcggagaagcaaacacttgcaaatcaacaacctgcaatc 8176490  T
Q  108 attt 111  Q
    ||||    
T  8176491 attt 8176494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 6e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 382 - 584
Target Start/End: Original strand, 18846725 - 18846920
Alignment:
Q  382 atatttttactgatagctatgtataccttgaaaagttggtggcaaagagcccaaattaagttcttcaaattcaactgaatcaattttatactttggaatt 481  Q
    |||||||| ||||| | |||  ||||||||||||||||||||||  |||||||| ||| |||||||||||||||| ||||||| ||| ||||||||||||    
T  18846725 atatttttgctgattgttataaataccttgaaaagttggtggca--gagcccaagttatgttcttcaaattcaacagaatcaactttgtactttggaatt 18846822  T
Q  482 tgttccgcaataataggctttgctatagttcttgtagtcttgcaaattgcctatatataacattcaaccaatttttgataccctttgaaaattgatattc 581  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||    ||| |||||||||||||| ||||| ||| ||||||||||||||||||    
T  18846823 tgttcagcaataataggctttgctatagttcatgcagtcttgcaaattg----tatttaacattcaaccaa-ttttggtactctttgaaaattgatattc 18846917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 18846447 - 18846513
Alignment:
Q  271 ttcattgatagttccataatcaattccttttcatcagtgctatacactttcattcctgccagccatat 338  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  18846447 ttcattgatagttgcataatcaattccttttcatcagcgctatacactttgattcctg-cagccatat 18846513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 18845247 - 18845335
Alignment:
Q  8 agagacacgtaaatattggcgaaacaaggaaaactaggaacc--aaaggcttcaacattatgcgcggagaagcaaacacttgcaaatca 94  Q
    ||||| || |||||| ||||||||||||||||||||||||||  |||||| |||   |||||| |||||||||||| ||||||| ||||    
T  18845247 agagaaacataaataatggcgaaacaaggaaaactaggaaccaaaaaggcctcattgttatgctcggagaagcaaatacttgcatatca 18845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 328
Target Start/End: Complemental strand, 27793204 - 27793080
Alignment:
Q  204 tacctgaacggttgctcgcaatccaaatgctttaactgcaattataatgttaggattcccagcccatttcattgatagttccataatcaattccttttca 303  Q
    ||||||||||||||||  ||| |||||||| ||||| |||||  | |  || ||||| ||||||||||| || ||  | ||||||||||| ||||| |||    
T  27793204 tacctgaacggttgctttcaacccaaatgccttaacagcaatggtgacattgggatttccagcccattttatagaaggctccataatcaactccttctca 27793105  T
Q  304 tcagtgctatacactttcattcctg 328  Q
    |||||   ||| |||||||||||||    
T  27793104 tcagtcacataaactttcattcctg 27793080  T

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