View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0550_low_1 (Length: 714)
Name: NF0550_low_1
Description: NF0550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0550_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 198 - 714
Target Start/End: Complemental strand, 56442989 - 56442475
Alignment:
| Q |
198 |
tgaagtatgcaatgcatgaatccaatccaatccaatccaagtaaatctgcaacgtggcaaggagtgaggggtgatggcagcagcagcgataggagtgaga |
297 |
Q |
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| T |
56442989 |
tgaagtatgcaatgcatgaatccaatccaatccaa-----gtaaatttgcaacgtggcaaagagtgaggggtgatggcagcagtagcgataggagtgagg |
56442895 |
T |
|
| Q |
298 |
tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgttctgattattattacagaaaaagaagtagtagaatcaacgcttctt |
397 |
Q |
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| T |
56442894 |
tgctgctgctcattgtcgtttccgtctcatcgcaaatcttcatcttcttcatgctctgattattattacagaagaagaagtagtagaatcaacgcttctt |
56442795 |
T |
|
| Q |
398 |
cattgttctggggatcttctaaggacaacaacaaacataataacatttcttcttcttcttc---atcgcatcagcaacaattcagcttcaatgtgaccac |
494 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
56442794 |
cattgttctggggatcttctaaggacaacaacaaacagaataacatttcttcttcttcttcttcatcgcatcagcaacaattcagcttcaatgttaccac |
56442695 |
T |
|
| Q |
495 |
cacaacagaatctgaagaagataaagataagattattactgtttcttttgtatcttcaatttcagatattccatccacccaatgggatgcatgtgctctt |
594 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56442694 |
cacaacagaatctgaagaagataaagataaaattattactgtttcttttgtatcttcaatttcagatattccatccacccaatgggatgcatgtgctctt |
56442595 |
T |
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| Q |
595 |
gatgctacaggagaaccagacaaattcaatccatttctctcacacgcatttctatcctctctagaactatcatcttcttctgttaaggaaaaggtattga |
694 |
Q |
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|||||||| |||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
56442594 |
gatgctactggaggaccagacaagttcaatccatttctctcacacgcttttctatcctctctagaactatcatcttcttctgttaaggaaaagggatgga |
56442495 |
T |
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| Q |
695 |
ccccacaccacttcaccgct |
714 |
Q |
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| T |
56442494 |
ccccacaccacatcatcgct |
56442475 |
T |
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