View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0550_low_10 (Length: 333)

Name: NF0550_low_10
Description: NF0550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0550_low_10
NF0550_low_10
[»] chr2 (5 HSPs)
chr2 (64-319)||(21844695-21844951)
chr2 (64-319)||(21843068-21843325)
chr2 (204-272)||(32619576-32619644)
chr2 (30-61)||(21844985-21845016)
chr2 (252-302)||(18236385-18236435)
[»] chr1 (3 HSPs)
chr1 (204-311)||(34381642-34381749)
chr1 (214-283)||(25373730-25373799)
chr1 (66-194)||(14136483-14136611)
[»] chr5 (3 HSPs)
chr5 (204-317)||(22967910-22968023)
chr5 (252-319)||(17382101-17382168)
chr5 (252-319)||(24517336-24517403)
[»] chr3 (2 HSPs)
chr3 (204-319)||(8402616-8402731)
chr3 (213-319)||(21829198-21829304)
[»] chr6 (2 HSPs)
chr6 (252-310)||(14924492-14924550)
chr6 (252-316)||(32930541-32930605)
[»] chr7 (2 HSPs)
chr7 (214-319)||(29544463-29544568)
chr7 (248-311)||(22067880-22067943)
[»] chr8 (2 HSPs)
chr8 (204-302)||(16052360-16052458)
chr8 (210-308)||(31436419-31436517)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 64 - 319
Target Start/End: Complemental strand, 21844951 - 21844695
Alignment:
Q  64 ttggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtt 163  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  21844951 ttggttcaagaggatagtgacaccgatgaagactcccctagtctagaggtaatggggttgtttgtgagatgatacaacctctatgttcaataaaatggtt 21844852  T
Q  164 tgaaacataatgaataaaatttgattaacttaggaa-gcttatgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttga 262  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  21844851 tgaaacataatgactaaaatttgattaacttaggaaggcttatgacagagcatcatatgatattttaggtaaaaattttattagatttctttgcatttga 21844752  T
Q  263 agacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 319  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||    
T  21844751 agacaaataagttgtaatttagaggagttgtcaatggttttaggaacatgttatatt 21844695  T

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Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 64 - 319
Target Start/End: Complemental strand, 21843325 - 21843068
Alignment:
Q  64 ttggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtt 163  Q
    |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  21843325 ttggttcaagaggatagttataccgatgaagactcccctagtctagaggtaatggggttgtttgtgagatgatacaacctctatgttcaataaaatggtt 21843226  T
Q  164 tgaaacataatgaataaaatttgattaacttaggaag-cttatgacag-agtatcatatgatattttaggtaaaatttttattagatttatttgcatttg 261  Q
    ||||||||||| | ||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||| |||||||||||||| ||||||||||    
T  21843225 tgaaacataatcactaaaatttgattaacttaggaagacttatgaaagaagcatcatatgatattttaggtaaattttttattagatttctttgcatttg 21843126  T
Q  262 aagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 319  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  21843125 aagacaaataagttgtaatttagaggagttgccaatggttttaggaacatgttgtatt 21843068  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 32619576 - 32619644
Alignment:
Q  204 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataa 272  Q
    |||||||| |||||||||||||||| ||  | ||||||| ||  ||| |||||||||||||||||||||    
T  32619576 atgacagaatatcatatgatatttttggctatatttttagtacttttctttgcatttgaagacaaataa 32619644  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 21845016 - 21844985
Alignment:
Q  30 atatagtcaagaagaatgagaagaagtacatt 61  Q
    ||||||||||||||||||||||||||||||||    
T  21845016 atatagtcaagaagaatgagaagaagtacatt 21844985  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 18236435 - 18236385
Alignment:
Q  252 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 302  Q
    ||||||||||||| |||| ||||||||||||| || ||||| |||||||||    
T  18236435 tttgcatttgaaggcaaagaaattgtaatttatagaagttgtcaatggttt 18236385  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 34381642 - 34381749
Alignment:
Q  204 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 303  Q
    |||||| ||||||||||  |||||||||| |  |||||||||| ||||||||||||||||| |||||||  ||||||||| ||||||||  ||||||||     
T  34381642 atgacaaagtatcatatagtattttaggttatgtttttattagttttatttgcatttgaaggcaaataagatgtaatttagaggagttgttaatggtttg 34381741  T
Q  304 aggaacat 311  Q
    | ||||||    
T  34381742 aagaacat 34381749  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 283
Target Start/End: Original strand, 25373730 - 25373799
Alignment:
Q  214 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaattta 283  Q
    ||||| ||||||| ||||  | ||||||| ||| ||| ||||||||||||| ||||||||||||||||||    
T  25373730 atcatgtgatattctaggctatatttttagtagttttctttgcatttgaaggcaaataaattgtaattta 25373799  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 14136611 - 14136483
Alignment:
Q  66 ggttcaagaggatagtgacaccgatgaagactcccctggtctagaggtaatgaggttgtttgtgagatgatacaacctctatgttcaataaattggtttg 165  Q
    |||||||||||||||| ||  || |||||| || ||| ||  ||||  |||| ||||||| ||| |||||||||||  |||||| ||| | | ||||||     
T  14136611 ggttcaagaggatagtaacttcggtgaagattcacctagtaaagagaaaatgtggttgttcgtgggatgatacaactactatgtccaaaagaatggttta 14136512  T
Q  166 aaacataatgaataaaatttgattaactt 194  Q
    |||||||||||  ||| ||||||||||||    
T  14136511 aaacataatgacaaaattttgattaactt 14136483  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 22968023 - 22967910
Alignment:
Q  204 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggtttt 303  Q
    ||||| ||||||||||||||||||||||  |  |||||| ||| ||| ||||||| | |||||||||||  || | |||| ||||||||  ||||||||     
T  22968023 atgacggagtatcatatgatattttaggctatgtttttagtagttttctttgcatgttaagacaaataagatggattttagaggagttgtgaatggtttg 22967924  T
Q  304 aggaacatgttgta 317  Q
    |||||||| |||||    
T  22967923 aggaacatattgta 22967910  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 17382168 - 17382101
Alignment:
Q  252 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 319  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| |||||||    
T  17382168 tttgcatttgaagacaaataagatgagagttagaggagttgtcaatggtttgaggaacatattgtatt 17382101  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 24517336 - 24517403
Alignment:
Q  252 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgtatt 319  Q
    |||||||||||||||||||||  ||  | ||| |||||||| ||||||||| |||||||| |||||||    
T  24517336 tttgcatttgaagacaaataagatgagaattagaggagttgtcaatggtttgaggaacatattgtatt 24517403  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 8402731 - 8402616
Alignment:
Q  204 atgacagagtatcatatgatattttaggtaaaatttttattagattta-tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 302  Q
    ||||||||| |||||||||||||||||   |  |||||||   ||||| ||||||||||||| |||||||  ||||||||| |||||||| |||||||||    
T  8402731 atgacagagcatcatatgatattttagactatgtttttatgt-atttactttgcatttgaaggcaaataagatgtaatttagaggagttgtcaatggttt 8402633  T
Q  303 taggaacatgttgtatt 319  Q
     |||||||  |||||||    
T  8402632 gaggaacaatttgtatt 8402616  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 21829304 - 21829198
Alignment:
Q  213 tatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatg 312  Q
    |||||||||||||||| |   | |||||||||   |||||||||||||||||  ||||||   || ||||| |||||||| ||||||||| ||||||||     
T  21829304 tatcatatgatatttttgactatatttttatttattttatttgcatttgaaggaaaataagaggtcatttagaggagttgtcaatggtttgaggaacatt 21829205  T
Q  313 ttgtatt 319  Q
    |||||||    
T  21829204 ttgtatt 21829198  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 14924550 - 14924492
Alignment:
Q  252 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaaca 310  Q
    ||||||||||||| |||||||  ||||||||| |||||||| ||||||||| |||||||    
T  14924550 tttgcatttgaaggcaaataatatgtaatttagaggagttgtcaatggtttgaggaaca 14924492  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 32930605 - 32930541
Alignment:
Q  252 tttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgttgt 316  Q
    ||||||||||||| |||||||  ||| ||||| |||||||| |||||||||  ||||||| ||||    
T  32930605 tttgcatttgaaggcaaataagatgtcatttagaggagttgtcaatggtttgcggaacattttgt 32930541  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 29544463 - 29544568
Alignment:
Q  214 atcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacatgt 313  Q
    ||||||||||||||| ||  |  |||||||||  ||| |||||||||||||||||||||  ||  | ||| |||||||| |||| |||| |||||||| |    
T  29544463 atcatatgatatttttggctatgtttttattaattttctttgcatttgaagacaaataagatgagagttagaggagttgtcaatagtttgaggaacatat 29544562  T
Q  314 tgtatt 319  Q
    ||||||    
T  29544563 tgtatt 29544568  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 22067943 - 22067880
Alignment:
Q  248 tttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaacat 311  Q
    |||||||||||||||||||||||||  ||  | ||| |||||||| ||||||||| ||||||||    
T  22067943 tttatttgcatttgaagacaaataagatgagagttaaaggagttgtcaatggtttgaggaacat 22067880  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 16052458 - 16052360
Alignment:
Q  204 atgacagagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttt 302  Q
    ||||| ||| ||||||||||||||| ||  |  |||||| ||  ||||||||||||||| |||||||||| ||  | ||| |||||||| |||||||||    
T  16052458 atgacggagcatcatatgatatttttggctatgtttttagtacttttatttgcatttgaggacaaataaaatgagagttagaggagttgtcaatggttt 16052360  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 31436419 - 31436517
Alignment:
Q  210 gagtatcatatgatattttaggtaaaatttttattagatttatttgcatttgaagacaaataaattgtaatttacaggagttgccaatggttttaggaa 308  Q
    ||||||||||||||||||||    | ||||||| |   ||||| ||||||||||| |||||||  ||||||||| |||||||| ||||| ||| |||||    
T  31436419 gagtatcatatgatattttatactatatttttagttattttatctgcatttgaaggcaaataagatgtaatttagaggagttgtcaatgatttgaggaa 31436517  T

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