View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0550_low_2 (Length: 547)
Name: NF0550_low_2
Description: NF0550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0550_low_2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 34 - 547
Target Start/End: Complemental strand, 6854841 - 6854328
Alignment:
| Q |
34 |
ttagtcaagagctggcatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatgttttgttttggcatgtag |
133 |
Q |
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| T |
6854841 |
ttagtcaagagctggtatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatgttttgttttggcatgtag |
6854742 |
T |
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| Q |
134 |
aaatggggcgtcggatagaacaacaatgctaacattgttgctgagcagcgctatggctaccatttttgaggtgttgaacctctatagccaaaaaatatgc |
233 |
Q |
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| T |
6854741 |
aa-tggggcgttggatagaacaagaatgctaacattgttgctgagcagcgctatggctaccatttttgaggtgttgaacctctatagccaaaaaatatgc |
6854643 |
T |
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| Q |
234 |
caaattctaaagttgtttgagcgtaaactaacttttaatctttggtaatgtgttgctgaatgtggggaagtgaattgccagtagctaagatgtaatgatt |
333 |
Q |
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| T |
6854642 |
caaattctaaagttgtttgagcgtaaactaacttttaatctttggtaatgtgttgctgaatgtggggaagtgaattgccagtagctaagatgtaatgatt |
6854543 |
T |
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| Q |
334 |
gtaatctacatagactaacatcactatagtgtagtaaagagtgataagtgtaaacagaaaaaggttatgtctgcttggtgtaaaatgt-gtttcttgatg |
432 |
Q |
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| T |
6854542 |
gtaatctacatagactaacatcactatagtgtagtaaagagtgataagtgtaaacaaaaaaaggttatgtctgcttggtgtaaaatgtggtttcttgatg |
6854443 |
T |
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| Q |
433 |
cagaagttaggtgtttaaacaaaattctttgagctagattgaggccatagattgctttatacaatttgcacactagagatttatcttttaatccaaagcc |
532 |
Q |
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| T |
6854442 |
cagaagttaggtgtttaaacaaaattctttgagctagattgaggccataaattgctttatacaatttgcacactagagatttatcttttaatccaaagcc |
6854343 |
T |
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| Q |
533 |
taggaactaggatgt |
547 |
Q |
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| T |
6854342 |
taggaactaggatgt |
6854328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 6823569 - 6823712
Alignment:
| Q |
37 |
gtcaagagctggcatgtgcttgacaagtaggttttggctgatgaatctctctgagaaagaatatgtcaagctccatatgttttgttttggcatgtagaaa |
136 |
Q |
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|||||||||||||||||||||||||| || |||| ||||||||| ||||||| || ||||||| |||| |||| |||||||| |||| | ||||||||| |
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| T |
6823569 |
gtcaagagctggcatgtgcttgacaattatgtttcggctgatgactctctctaagcaagaataggtcaggctctatatgtttggtttcgacatgtagaat |
6823668 |
T |
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| Q |
137 |
tggggcgtcggatagaacaacaatgctaacattgttgctgagca |
180 |
Q |
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| T |
6823669 |
ggggtcgtaggatagaacaacaatgctaacattgttgcagagca |
6823712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 478 - 534
Target Start/End: Original strand, 6824196 - 6824252
Alignment:
| Q |
478 |
catagattgctttatacaatttgcacactagagatttatcttttaatccaaagccta |
534 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6824196 |
catagattgctttatacaatttgcacactagagatttatcttctaatccaaagccta |
6824252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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