View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0550_low_3 (Length: 483)
Name: NF0550_low_3
Description: NF0550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0550_low_3 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] scaffold0458 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 97 - 483
Target Start/End: Original strand, 44474349 - 44474735
Alignment:
| Q |
97 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44474349 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
44474448 |
T |
|
| Q |
197 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44474449 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
44474548 |
T |
|
| Q |
297 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
44474549 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgcttggtccagccgtgttgcgaaatgtcatgt |
44474648 |
T |
|
| Q |
397 |
taaccgctaagaatccttgtgcaaccacagctgcaagtatatcataaagtgagtgtaaggattattcaagcacatgtacaaaattta |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44474649 |
taaccgctaagaatccttgtgcaaccacagctgcaagtatatcataaagtgagtgtaaggattattcaagcacatgtacaaaattta |
44474735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 147 - 361
Target Start/End: Original strand, 44463823 - 44464037
Alignment:
| Q |
147 |
ttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaaaacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcac |
246 |
Q |
| |
|
|||||||||||||| | ||||| || ||||| | ||| ||| ||| |||||||| ||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
44463823 |
ttgaattgtccactcattggaagacgtggatagaggttacaattttggaaaacaaccttagcatttccgaatatgaaatctactgttccataaatgtcac |
44463922 |
T |
|
| Q |
247 |
attcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatagccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttac |
346 |
Q |
| |
|
|||| | || ||||| || | ||||||||||| || || ||||| || |||||||| ||||| ||||| || || || ||||| || |||||||| | |
|
|
| T |
44463923 |
attctctgtagaattgtcttagtgaatgtgtgtataacgtgtcttggtacccttcgaaactgcaactgtaaaatgttgataaatctgccccgtttctaag |
44464022 |
T |
|
| Q |
347 |
cgcgactgcttggtg |
361 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
44464023 |
tgccactgcttggtg |
44464037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 428
Target Start/End: Original strand, 44488528 - 44488854
Alignment:
| Q |
102 |
cctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgtt-gggaagtcggggatatatgttgcaagattgtaaaaca |
200 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||| || | |||||||||||| ||| |||||| || |||||||| ||||| ||| |||||| |
|
|
| T |
44488528 |
cctgtgttttggtttggatcagtgcgtccttgagcggtgatgggattgaattgtcca-tgtaagggaagacgaggatatatattgcagttttgcaaaaca |
44488626 |
T |
|
| Q |
201 |
acagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatagcctt |
300 |
Q |
| |
|
|| || || ||||||||||| || || | ||||||||| ||||| ||||| |||||||||||| | ||||||| || | ||| ||||| || |||| |
|
|
| T |
44488627 |
actgcggcgtttccaaatataaaatctattgttccataaatgtcgcattctttataaaattgccttagtgaatgtgcatagagagtgtcttggtaccctt |
44488726 |
T |
|
| Q |
301 |
cgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgttaac |
400 |
Q |
| |
|
| |||||||| | ||||| |||||| ||| || || |||| | || ||||||||| |||| |||| || || ||||| || ||||| |||||||| |
|
|
| T |
44488727 |
caaagctgcaacgatagaaactggacatatctgccccacttctcattgcaactgcttggaatttgcttggcccggctgtgttccgaaatgttatgttaac |
44488826 |
T |
|
| Q |
401 |
cgctaagaatccttgtgcaaccacagct |
428 |
Q |
| |
|
|||| |||||| |||| || |||||| |
|
|
| T |
44488827 |
tgctacaaatcctggtgctacgacagct |
44488854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 400
Target Start/End: Original strand, 12534 - 12837
Alignment:
| Q |
97 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| || || | |||||||||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
12534 |
aagttccagtgttttgatttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaa |
12633 |
T |
|
| Q |
197 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
296 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| || || || ||||| |||||||| ||||| | |||||||| ||||| || || ||||| |
|
|
| T |
12634 |
aacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatac |
12733 |
T |
|
| Q |
297 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgt |
396 |
Q |
| |
|
||||| ||||| || || ||||||||||||| ||| ||||| |||||| || ||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
12734 |
ccttcaaagctacaactatagaaggtggacatatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgt |
12833 |
T |
|
| Q |
397 |
taac |
400 |
Q |
| |
|
|||| |
|
|
| T |
12834 |
taac |
12837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 400
Target Start/End: Original strand, 2715 - 2796
Alignment:
| Q |
319 |
aggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgttaac |
400 |
Q |
| |
|
||||||||| ||| ||||| |||||| || ||||||||||||||| |||||||||| |||||||| ||||| |||||||| |
|
|
| T |
2715 |
aggtggacatatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgttaac |
2796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 400
Target Start/End: Complemental strand, 39451128 - 39450825
Alignment:
| Q |
97 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| || || | |||||||||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
39451128 |
aagttccagtgttttgatttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaa |
39451029 |
T |
|
| Q |
197 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
296 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| || || || ||||| |||||||| ||||| | |||||||| ||||| || || ||||| |
|
|
| T |
39451028 |
aacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatac |
39450929 |
T |
|
| Q |
297 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgt |
396 |
Q |
| |
|
||||| ||||| || || ||||||||||||| ||| ||||| |||||| || ||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
39450928 |
ccttcaaagctacaactatagaaggtggacatatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgt |
39450829 |
T |
|
| Q |
397 |
taac |
400 |
Q |
| |
|
|||| |
|
|
| T |
39450828 |
taac |
39450825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 400
Target Start/End: Complemental strand, 39460515 - 39460212
Alignment:
| Q |
97 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| || || | |||||||||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
39460515 |
aagttccagtgttttgatttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaa |
39460416 |
T |
|
| Q |
197 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
296 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| || || || ||||| |||||||| ||||| | |||||||| ||||| || || ||||| |
|
|
| T |
39460415 |
aacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatac |
39460316 |
T |
|
| Q |
297 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgt |
396 |
Q |
| |
|
||||| ||||| || || ||||||||||||| ||| ||||| |||||| || ||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
39460315 |
ccttcaaagctacaactatagaaggtggacatatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgt |
39460216 |
T |
|
| Q |
397 |
taac |
400 |
Q |
| |
|
|||| |
|
|
| T |
39460215 |
taac |
39460212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 97 - 400
Target Start/End: Complemental strand, 39472000 - 39471697
Alignment:
| Q |
97 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| || || | |||||||||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
39472000 |
aagttccagtgttttgatttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaa |
39471901 |
T |
|
| Q |
197 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
296 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| || || || ||||| |||||||| ||||| | |||||||| ||||| || || ||||| |
|
|
| T |
39471900 |
aacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatac |
39471801 |
T |
|
| Q |
297 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgt |
396 |
Q |
| |
|
||||| ||||| || || ||||||||||||| ||| ||||| |||||| || ||||||||||||||| |||||||||| |||||||| ||||| |||| |
|
|
| T |
39471800 |
ccttcaaagctacaactatagaaggtggacatatctgctccacttcttagtgcaactgcttggtgtttgcttggtccagcggtgttgcgaaatgttatgt |
39471701 |
T |
|
| Q |
397 |
taac |
400 |
Q |
| |
|
|||| |
|
|
| T |
39471700 |
taac |
39471697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 97 - 432
Target Start/End: Original strand, 24060999 - 24061334
Alignment:
| Q |
97 |
aagttcctgtgttttgatttggatccgttcggccttgagcggttatagcgttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaa |
196 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| || || | |||||||||||||| ||||| || ||||| ||||| ||| ||| || |
|
|
| T |
24060999 |
aagttccagtgttttgatttggatcagttcgaccttgagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaa |
24061098 |
T |
|
| Q |
197 |
aacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatag |
296 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| || || || ||||| |||||||| ||||| | |||||||| ||||| || || ||||| |
|
|
| T |
24061099 |
aacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatac |
24061198 |
T |
|
| Q |
297 |
ccttcgaagctgcagctgtagaaggtggacaaatcagctccgtttcttaccgcgactgcttggtgtttgattggtccagccgtgttgcgtaatgtcatgt |
396 |
Q |
| |
|
||||| ||||| || || ||||||||||||| ||| ||||| |||||| || |||||||| | ||| || |||||| |||||||| ||||| |||| |
|
|
| T |
24061199 |
ccttcaaagctacaactatagaaggtggacatatctgctccacttcttagtgcaactgcttgattttttgctgctccagcggtgttgcgaaatgttatgt |
24061298 |
T |
|
| Q |
397 |
taaccgctaagaatccttgtgcaaccacagctgcaa |
432 |
Q |
| |
|
|||| || | ||| ||||| |||||||||||||||| |
|
|
| T |
24061299 |
taactgccacgaacccttgagcaaccacagctgcaa |
24061334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 262
Target Start/End: Complemental strand, 41573654 - 41573587
Alignment:
| Q |
195 |
aaaacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattg |
262 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| || || || || ||||||||||| || |||||||| |
|
|
| T |
41573654 |
aaaacaactgcagcattgccaaatatgaagtctaccgtaccgtaaatgtcacattcacggtaaaattg |
41573587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 2578511 - 2578575
Alignment:
| Q |
198 |
acaacagcagcatttccaaatatgaagtcaactgttccatagatgtcacattcgcgataaaattg |
262 |
Q |
| |
|
|||||||| | ||||||||| ||||| |||||||||||||| |||| ||||| | ||||||||| |
|
|
| T |
2578511 |
acaacagctgaatttccaaaaatgaaatcaactgttccataaatgttgcattctctataaaattg |
2578575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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