View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0550_low_5 (Length: 438)

Name: NF0550_low_5
Description: NF0550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0550_low_5
NF0550_low_5
[»] chr3 (7 HSPs)
chr3 (8-194)||(41703355-41703541)
chr3 (289-409)||(41703616-41703736)
chr3 (303-343)||(31516592-31516632)
chr3 (303-405)||(30378220-30378323)
chr3 (303-404)||(1418845-1418947)
chr3 (303-350)||(15488560-15488607)
chr3 (303-363)||(53630877-53630937)
[»] chr4 (5 HSPs)
chr4 (298-379)||(4458968-4459049)
chr4 (303-379)||(36103069-36103145)
chr4 (134-194)||(5371318-5371378)
chr4 (131-194)||(36789413-36789476)
chr4 (147-194)||(48380126-48380173)
[»] chr5 (4 HSPs)
chr5 (300-409)||(7137044-7137157)
chr5 (303-405)||(41870717-41870820)
chr5 (133-194)||(20454726-20454787)
chr5 (147-194)||(33107090-33107137)
[»] chr7 (2 HSPs)
chr7 (303-405)||(15678948-15679051)
chr7 (303-404)||(12380579-12380681)
[»] chr2 (4 HSPs)
chr2 (303-405)||(18581600-18581703)
chr2 (303-405)||(38698108-38698211)
chr2 (147-194)||(19374096-19374143)
chr2 (131-194)||(36499220-36499283)
[»] chr1 (2 HSPs)
chr1 (303-405)||(9957931-9958034)
chr1 (303-405)||(32177808-32177911)
[»] scaffold0002 (2 HSPs)
scaffold0002 (129-194)||(112759-112824)
scaffold0002 (129-194)||(116367-116432)
[»] scaffold0351 (1 HSPs)
scaffold0351 (149-194)||(8788-8833)
[»] chr8 (4 HSPs)
chr8 (298-409)||(17635165-17635274)
chr8 (289-350)||(42268947-42269008)
chr8 (152-194)||(26229238-26229280)
chr8 (128-189)||(37314566-37314628)
[»] chr6 (2 HSPs)
chr6 (147-192)||(32553420-32553465)
chr6 (303-350)||(31278712-31278759)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 41703355 - 41703541
Alignment:
Q  8 cagcacagaccattaaggagcgattgttacatgacattgaccaatccaatagcgacacataagccaactcaattatttttctctctcacacacacattat 107  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||    
T  41703355 cagcccagaccattaaggaacgattgtcacatgacattgaccaattcaatagtaacacataagccaattcaattatttttctctctcacgcacacattat 41703454  T
Q  108 atattttatgtttnnnnnnnttatattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    |||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703455 atattttatgtttaaaaaaattatattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 41703541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 289 - 409
Target Start/End: Original strand, 41703616 - 41703736
Alignment:
Q  289 ggggccttatagataaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaatccgagatta 388  Q
    |||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41703616 ggggccttctagataaatgaatcttaattttctcaatgataaatattttaagcatttatcatatgtcgattatttaaaaaaattaagcaatccgagatta 41703715  T
Q  389 gtgatcgaaaatggctaatat 409  Q
    |||||||||||| ||||||||    
T  41703716 gtgatcgaaaatagctaatat 41703736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 31516632 - 31516592
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcat 343  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31516632 aaatgaatcttaattttctcaatgacagatattttaggcat 31516592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 30378220 - 30378323
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  30378220 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 30378319  T
Q  402 gcta 405  Q
    ||||    
T  30378320 gcta 30378323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 404
Target Start/End: Complemental strand, 1418947 - 1418845
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  1418947 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 1418848  T
Q  402 gct 404  Q
    |||    
T  1418847 gct 1418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 15488607 - 15488560
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcat 350  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||    
T  15488607 aaatgaatcttaattttctcaatgacaattattttaggcatttctcat 15488560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 53630937 - 53630877
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattattt 363  Q
    ||||||||||||||||||  ||||||| |||||||||| |||| ||||||| | |||||||    
T  53630937 aaatgaatcttaattttcctaatgacaaatattttaggtatttctcatatgccaattattt 53630877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 4458968 - 4459049
Alignment:
Q  298 tagataaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat 379  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||| ||||||| | ||||||||| |||||||||||||    
T  4458968 tagagaaatgaatcttaattttcccaatgacacatattttaggcatttctcatatgccaattatttaagaaaattaagcaat 4459049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 379
Target Start/End: Original strand, 36103069 - 36103145
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat 379  Q
    |||||||||||||||||| |||||||| |||| ||||| |||| ||||||||  |||||| || |||||||||||||    
T  36103069 aaatgaatcttaattttcccaatgacaaatatcttaggtatttctcatatgtgaattattaaagaaaattaagcaat 36103145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 5371318 - 5371378
Alignment:
Q  134 tgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    |||||| ||||  ||||||||||| ||||| |||||||||||||||| || ||||||||||    
T  5371318 tgtcacgtgtcacacttgaattggtcaatggcatgtgacattatgtcgcacaagtgcaatc 5371378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 36789476 - 36789413
Alignment:
Q  131 tattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    ||||||||| ||||  | || ||||| | ||||||| |||||||||||||||||||||||||||    
T  36789476 tattgtcacgtgtcacatttaaattgacgaatgtcacgtgacattatgtcacataagtgcaatc 36789413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 48380126 - 48380173
Alignment:
Q  147 acttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    |||| ||||||||||||||| |||||||||||||||| ||||| ||||    
T  48380126 acttcaattggccaatgtcacgtgacattatgtcacacaagtgaaatc 48380173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 409
Target Start/End: Complemental strand, 7137157 - 7137044
Alignment:
Q  300 gataaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat----ccgagattagtgatcg 395  Q
    |||||||||||| |||||||||| |||| | ||||||||||||||| ||||||||  |||||| || |||||||||||||      || |||||||||||    
T  7137157 gataaatgaatcataattttctcgatgataaatattttaggcatttctcatatgttaattattaaagaaaattaagcaatgatgatgatattagtgatcg 7137058  T
Q  396 aaaatggctaatat 409  Q
    ||||||||||||||    
T  7137057 aaaatggctaatat 7137044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 41870717 - 41870820
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || |||||||||||||   ||||||| ||||||||| ||    
T  41870717 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagcaatggtgagattaatgatcgaaagtg 41870816  T
Q  402 gcta 405  Q
    ||||    
T  41870817 gcta 41870820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 194
Target Start/End: Original strand, 20454726 - 20454787
Alignment:
Q  133 ttgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    ||||||| ||||  ||||||||||| ||||| ||||||||||||||||||| |||| |||||    
T  20454726 ttgtcacgtgtcacacttgaattggtcaatggcatgtgacattatgtcacacaagtacaatc 20454787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 33107137 - 33107090
Alignment:
Q  147 acttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    |||||||||| | |||||||| ||||||||||||||| ||||||||||    
T  33107137 acttgaattgacgaatgtcatatgacattatgtcacaaaagtgcaatc 33107090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 15679051 - 15678948
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  15679051 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 15678952  T
Q  402 gcta 405  Q
    ||||    
T  15678951 gcta 15678948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 303 - 404
Target Start/End: Original strand, 12380579 - 12380681
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  12380579 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 12380678  T
Q  402 gct 404  Q
    |||    
T  12380679 gct 12380681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 18581703 - 18581600
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  18581703 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 18581604  T
Q  402 gcta 405  Q
    ||||    
T  18581603 gcta 18581600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 38698108 - 38698211
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  38698108 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 38698207  T
Q  402 gcta 405  Q
    ||||    
T  38698208 gcta 38698211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 19374143 - 19374096
Alignment:
Q  147 acttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||||    
T  19374143 acttgaattggccaatttaatgtgacattatgtcacacaagtgcaatc 19374096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 194
Target Start/End: Complemental strand, 36499283 - 36499220
Alignment:
Q  131 tattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    ||||||||||| ||  ||||||||| | |||| |||||| ||||||||||||| ||||||||||    
T  36499283 tattgtcacatctcacacttgaattagtcaatatcatgtaacattatgtcacacaagtgcaatc 36499220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 405
Target Start/End: Original strand, 9957931 - 9958034
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | ||||||||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  9957931 aaatgaatcttaattttcccaatgacaaatactctaggcatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 9958030  T
Q  402 gcta 405  Q
    ||||    
T  9958031 gcta 9958034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 405
Target Start/End: Complemental strand, 32177911 - 32177808
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcgaaaatg 401  Q
    |||||||||||||||||| |||||||| ||| | |||| |||| |||||||   |||||| || ||||||||| |||   ||||||||||||||||| ||    
T  32177911 aaatgaatcttaattttcccaatgacaaatactctaggtatttctcatatgcgaattattcaagaaaattaagtaatggtgagattagtgatcgaaagtg 32177812  T
Q  402 gcta 405  Q
    ||||    
T  32177811 gcta 32177808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 112824 - 112759
Alignment:
Q  129 tatattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    ||||||||||||||||  | |||||||||||||||||||  | |||||||||||| ||||||||||    
T  112824 tatattgtcacatgtcacaattgaattggccaatgtcatagggcattatgtcacacaagtgcaatc 112759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 116432 - 116367
Alignment:
Q  129 tatattgtcacatgtcgaacttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    ||||||||||||||||  | || ||||||||||||||||  | |||||||||||| ||||||||||    
T  116432 tatattgtcacatgtcacaatttaattggccaatgtcatagggcattatgtcacacaagtgcaatc 116367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 8788 - 8833
Alignment:
Q  149 ttgaattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    |||||||||||||||||||  |||||||||||||| ||||||||||    
T  8788 ttgaattggccaatgtcataggacattatgtcacacaagtgcaatc 8833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 17635274 - 17635165
Alignment:
Q  298 tagataaatgaatcttaattttctcaatgacagatattttaggcatttatcatatgtcgattatttaataaaattaagcaat-ccgagattagtgatcga 396  Q
    |||| ||||||||||||||||| ||||||||| ||||||||| ||||| ||  |||   |||||| || |||||||||||||   ||||||||| |||||    
T  17635274 tagagaaatgaatcttaatttt-tcaatgacaaatattttagtcatttctc--atgcaaattattcaagaaaattaagcaataatgagattagtaatcga 17635178  T
Q  397 aaatggctaatat 409  Q
    |||||| ||||||    
T  17635177 aaatggataatat 17635165  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 42268947 - 42269008
Alignment:
Q  289 ggggccttatagataaatgaatcttaattttctcaatgacagatattttaggcatttatcat 350  Q
    ||||||| ||||| |||||||| |||| ||||||||||||| ||||||||| ||||| ||||    
T  42268947 ggggcctaatagagaaatgaatgttaaatttctcaatgacaaatattttagacatttttcat 42269008  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 26229280 - 26229238
Alignment:
Q  152 aattggccaatgtcatgtgacattatgtcacataagtgcaatc 194  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||    
T  26229280 aattggccaatgttatgtgacattatgttacacaagtgcaatc 26229238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 37314628 - 37314566
Alignment:
Q  128 ttatattgtcacatgtcgaacttgaattggcc-aatgtcatgtgacattatgtcacataagtg 189  Q
    |||||||||||||| ||  ||||||||||||| |||||||| |||| |||||||||| |||||    
T  37314628 ttatattgtcacatttcatacttgaattggccaaatgtcatatgacgttatgtcacacaagtg 37314566  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 32553420 - 32553465
Alignment:
Q  147 acttgaattggccaatgtcatgtgacattatgtcacataagtgcaa 192  Q
    |||||||||| |||||||||||||||||||||||||| || |||||    
T  32553420 acttgaattgcccaatgtcatgtgacattatgtcacacaaatgcaa 32553465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 31278712 - 31278759
Alignment:
Q  303 aaatgaatcttaattttctcaatgacagatattttaggcatttatcat 350  Q
    ||||||||||||||||| ||||||| | ||||||||||||||| ||||    
T  31278712 aaatgaatcttaattttttcaatgaaaaatattttaggcatttctcat 31278759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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