View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0551_high_2 (Length: 437)
Name: NF0551_high_2
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 50 - 425
Target Start/End: Original strand, 38220565 - 38220940
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38220565 |
atcagtaacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggacgc |
38220664 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38220665 |
tcaaaaccttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatcaactgtaa |
38220764 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38220765 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
38220864 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttca |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38220865 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagtcgccgtccctcgtgtttca |
38220940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 38238475 - 38238849
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38238475 |
atcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
38238574 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
38238575 |
tcaaaaccttccttcaacttgcactgtttagaatcataacaacataacaaacctcctttataatctggcctaatagaccttccatattcatccactgtaa |
38238674 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||| ||| |||||||| ||||||||||| || |||| |||| | || | | |||| |
|
|
| T |
38238675 |
cattataaagctcacacttacactcagtgcaccctaatttatcctttgtgcctcgcgtatcgatggcatgaacattaagcaaccatttttcgtgaaaccc |
38238774 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| || ||||| || |||||||| |
|
|
| T |
38238775 |
ttctggaatctcttcaggattgcctatctctataccgaaaggatccggaatatcggtcgccgttccacgtgtttc |
38238849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 57 - 424
Target Start/End: Original strand, 38243420 - 38243787
Alignment:
| Q |
57 |
acatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaat |
156 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38243420 |
acatcaattacatatatcttaagaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctcaaaac |
38243519 |
T |
|
| Q |
157 |
cttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaacattata |
256 |
Q |
| |
|
|||||||||||||||||||| || | |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38243520 |
cttccttcaacttgcactgtgtacaatcataacaacataaccaacctcctttataatctggccttatagaccttccatattcatccaccgtaacattata |
38243619 |
T |
|
| Q |
257 |
aagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctgga |
356 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||| || |||| |||| | ||||| ||||||||| | |
|
|
| T |
38243620 |
aagctcgcacttacactcagtgcaccctaacttatcctctacgccacgtgtatcaatggcatgaacattaagcacccatttatcctcggacccttctgaa |
38243719 |
T |
|
| Q |
357 |
atctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
38243720 |
acctctgcaggattacctatctctataccaaaaggatccggaatatctgttgctgttcctcgtgtttc |
38243787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 38226946 - 38227320
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
38226946 |
atcagtaacatcaagtatatatatcttaacaggcactataaaatcatcccaatcaacccattttacagtgtatcttaggtagagacttctctttggaccc |
38227045 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
|||||| |||||||||||||||| ||| || ||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
38227046 |
tcaaaaccttccttcaacttgcattgtgtatggtcataacaacataacaaacctcctttataatctggcccaatagaccttccatattcatccactgtaa |
38227145 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||| || |||| |||| | |||||| |||| |
|
|
| T |
38227146 |
cattataaaggtcgcacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccc |
38227245 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||| |||||||| |||||||| |||| ||| ||||||||||| |
|
|
| T |
38227246 |
ttgtggaatctcttcaggattacctatctctataccgaaaggatctggaatatctgttgtcgttcctcgtgtttc |
38227320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 38214523 - 38214897
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
38214523 |
atcagtaacatcaattatatatatcttcacaggcacaataaaatcatcccaatcgacccattttacagtgtatcttagatagagacttctctttggcccc |
38214622 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
|||||| |||||||||| || |||||| || | |||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
38214623 |
tcaaaaccttccttcaatttacactgtgtataatcataacaacataacaaacctccttcataatctgacctaatagaccttccatattcatccactgtaa |
38214722 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||| ||||||||||| || | || |||| |||||||| |||| |
|
|
| T |
38214723 |
cattataaagctcacacttacactcggtgcaccctaacttatcctctgcgccgcgcgtatcgatggcatgaacattaaccaaccatttctcctcaaaccc |
38214822 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
38214823 |
ttctggaatctcttcaggattacctatctctataccaaaaggatccggaatatctgttgctgttcctcgtgtttc |
38214897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 403
Target Start/End: Original strand, 38253676 - 38254029
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
38253676 |
atcagtaacatcaattatatatatcttaacaggcactataaaatcatcccaatcaacccatttcactgtgtatcttaagtagaggtttctctttggaccc |
38253775 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
|||||| ||||||||||||||||| || || |||||||||||||| | ||||||||||||||| | ||||| |||||||| || |||||||| |||| |
|
|
| T |
38253776 |
tcaaaaccttccttcaacttgcaccgtgtatgatcataacaacataacatacctcctttataatcaggccttacagaccttccgtactcatccaccgtaa |
38253875 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||||||||||||||| | || || ||||| ||||||||||| || | ||||||| |||| ||| |||| |
|
|
| T |
38253876 |
cattataaagctcgcacttacactcggtgcaccctaacttatcctctgcacctcgtgtatcgatggcatgaacattaaccatccatttctcatcaaaccc |
38253975 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatc |
403 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
38253976 |
ttctggaacctctgcaggattacctacctctataccaaaagggtccggaatatc |
38254029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 52 - 424
Target Start/End: Original strand, 38248563 - 38248935
Alignment:
| Q |
52 |
cagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccctc |
151 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||| || || ||| |||||||||| ||||||||||| || || || |
|
|
| T |
38248563 |
cagtgacatcaattatatatatcttaacgggcactataaaatcatcccaatcaacccactttactgtgcatcttaagtaaaggcttctcttaggtccttc |
38248662 |
T |
|
| Q |
152 |
aaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaaca |
251 |
Q |
| |
|
||| ||||||||||||||||| || |||| |||||||||||||| ||||||||||||||||||| ||| || || ||||||| ||||||||||||||| |
|
|
| T |
38248663 |
gaaaccttccttcaacttgcaccgtgtagaatcataacaacataacaaacctcctttataatctggcctaatagattttccatactcatccactgtaaca |
38248762 |
T |
|
| Q |
252 |
ttataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccctt |
351 |
Q |
| |
|
|||||||| |||||||| || ||||| |||||||| |||||||| ||| |||||||| ||||||||||| || |||| |||| |||||||| |||||| |
|
|
| T |
38248763 |
ttataaaggtcacacttacattcagtgcaccctaatttatcctctgtgccacgcgtatcgatggcatgaacattaagcaaccatttctcctcaaaccctt |
38248862 |
T |
|
| Q |
352 |
ctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||| |||||||| |||| ||| ||||||||||| |
|
|
| T |
38248863 |
ctggaatctcttcaggactacctgtctctataccaaaaggatctggaatatctgttgtcgttcctcgtgtttc |
38248935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 17455176 - 17455550
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||| ||| |||||||| |||||||||||||||||||| | ||||| | | || || ||||||||||| ||| |
|
|
| T |
17455176 |
atcagtaacatcaattatgtatgtcttaagaggaactataaattcatcccaatcaacccatttgattttgtatttcagataaagacttctctttggtccc |
17455275 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
| |||| |||||||||||||||| ||| || |||||||||||| | ||||||||||||||||| ||| ||| | ||||||||||||||||||||||| |
|
|
| T |
17455276 |
ttaaaaccttccttcaacttgcattgtgtattatcataacaacatgacaaacctcctttataatcagacattaaaggccttccatattcatccactgtaa |
17455375 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||| ||||| || ||||| |||||||||| || | || |||| |||||||| |||| |
|
|
| T |
17455376 |
cattataaagctcacacttgcactcagtgcaccctagcttatcctctacgccacgtgtatcgatggcatgaatattaaacaaccatttctcctcaaaccc |
17455475 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
||||||||| |||| |||||||| ||||| ||||||||||||||||||||||| || | || ||||||||||| |
|
|
| T |
17455476 |
ttctggaatttctgttggattacccatctccataccaaaaggatccggaatatcggtcggtgttcctcgtgtttc |
17455550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 17434076 - 17434450
Alignment:
| Q |
50 |
atcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaacccatttaacagtgtatcttaagtagaggcttctctttggaccc |
149 |
Q |
| |
|
|||||| ||||||| ||| ||| |||| ||||||||||||||||||||||||||| |||||| | ||||| | | ||||| ||||||||||| ||| |
|
|
| T |
17434076 |
atcagtaacatcaattatgtatgccttaacaggcactataaaatcatcccaatcaatccatttgattttgtatttcagatagagacttctctttggtccc |
17434175 |
T |
|
| Q |
150 |
tcaaaatcttccttcaacttgcactgtttagagtcataacaacataagaaacctcctttataatctgaccttattgaccttccatattcatccactgtaa |
249 |
Q |
| |
|
|||||| || ||||||||||||| ||| || |||| ||||||| | ||| |||||||||||| | |||| | |||||||||||||||||||| | |
|
|
| T |
17434176 |
tcaaaacctaccttcaacttgcattgtgtattatcatgacaacatttcataccccctttataatctaaacttaaaggtcttccatattcatccactgtta |
17434275 |
T |
|
| Q |
250 |
cattataaagctcacacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcataccc |
349 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||| || | || ||| |||||||| |||| |
|
|
| T |
17434276 |
cattataaagctcacacttgcattcagtgcaccctaacttatcctctacgccacgtgtatcgatggcatgaatattaaacaaccacttctcctcaaaccc |
17434375 |
T |
|
| Q |
350 |
ttctggaatctctgcaggattacctatctctataccaaaaggatccggaatatcagttgccgtccctcgtgtttc |
424 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| | ||| ||||||||||| |
|
|
| T |
17434376 |
ttctggaatatctgcaggattacctatctctataccaaaaggatctggaatgtcagtcggcgttcctcgtgtttc |
17434450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 402
Target Start/End: Complemental strand, 21546773 - 21546676
Alignment:
| Q |
305 |
cgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctgcaggattacctatctctataccaaaaggatccggaatat |
402 |
Q |
| |
|
||||||||| |||||||| || | || |||| ||||| ||||||||| |||||| || ||||||||||| | ||||||||| |||| || ||||||| |
|
|
| T |
21546773 |
cgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggattaccaacttctataccataagggtctggaatat |
21546676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 11462753 - 11462691
Alignment:
| Q |
47 |
atcatcagtgacatcaagtatatatatcttagcaggcactataaaatcatcccaatcaaccca |
109 |
Q |
| |
|
||||||||| |||||||||| || |||||| | ||||| | ||||||||||||||||||||| |
|
|
| T |
11462753 |
atcatcagtcacatcaagtaagtaaatcttaactggcaccacaaaatcatcccaatcaaccca |
11462691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 217 times since January 2019
Visitors: 3675