View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0551_low_12 (Length: 304)
Name: NF0551_low_12
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 259151 - 259265
Alignment:
| Q |
25 |
gagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccattatcaatagcgattattgtattatccataatttgtaaaaccaat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
259151 |
gagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccgttatcaatagcgattattgtattatccataatttgtaaaaccaat |
259250 |
T |
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| Q |
125 |
gttcaacccttgggg |
139 |
Q |
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||||||||||||||| |
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| T |
259251 |
gttcaacccttgggg |
259265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 656770 - 656656
Alignment:
| Q |
25 |
gagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccattatcaatagcgattattgtattatccataatttgtaaaaccaat |
124 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
656770 |
gagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccgttatcaatagcgattattgtattatccataatttgtaaaaccaat |
656671 |
T |
|
| Q |
125 |
gttcaacccttgggg |
139 |
Q |
| |
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||||||||||||||| |
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| T |
656670 |
gttcaacccttgggg |
656656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 842505 - 842391
Alignment:
| Q |
25 |
gagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccattatcaatagcgattattgtattatccataatttgtaaaaccaat |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
842505 |
gagccaacaaaccagagctggagaagaagattgctgcagttaatttagttccccgttatcaatagcgattattgtattatccataatttgtaaaaccaat |
842406 |
T |
|
| Q |
125 |
gttcaacccttgggg |
139 |
Q |
| |
|
||||||||||||||| |
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|
| T |
842405 |
gttcaacccttgggg |
842391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 293
Target Start/End: Original strand, 259301 - 259417
Alignment:
| Q |
175 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaag |
274 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
259301 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagtt--aaaaaaaaagtttatttctgacatataaag |
259398 |
T |
|
| Q |
275 |
aattgttgagccctattca |
293 |
Q |
| |
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||||||||||||||||||| |
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| T |
259399 |
aattgttgagccctattca |
259417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 656620 - 656504
Alignment:
| Q |
175 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
656620 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagtt--aaaaaaaaagtttatttctgacatataaag |
656523 |
T |
|
| Q |
275 |
aattgttgagccctattca |
293 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
656522 |
aattgttgagccctattca |
656504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 842355 - 842239
Alignment:
| Q |
175 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagttnnnnnnnnnnngtttatttctgacatataaag |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
842355 |
ccctgcaactttaatttgtcactgtattttaatttgtaagtaaatattcaattgatatcattgtagtt--aaaaaaaaagtttatttctgacatataaag |
842258 |
T |
|
| Q |
275 |
aattgttgagccctattca |
293 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
842257 |
aattgttgagccctattca |
842239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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