View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0551_low_13 (Length: 282)
Name: NF0551_low_13
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 35629245 - 35629478
Alignment:
| Q |
22 |
catcatcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgc |
121 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35629245 |
catcctcagaaacgacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccatcgccacgtcccagattagcatgc |
35629344 |
T |
|
| Q |
122 |
atcatgttattacaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagc--at |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35629345 |
atcatgctattacaggtaacattcccattagcagccgctttcgctagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcatat |
35629444 |
T |
|
| Q |
220 |
aactaaatcaaaagccagcaaacataacggtaat |
253 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
35629445 |
aactaaatcaaaagccagcaaacataacggtaat |
35629478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 22 - 253
Target Start/End: Original strand, 35635665 - 35635896
Alignment:
| Q |
22 |
catcatcagaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgc |
121 |
Q |
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|||| |||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | |
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| T |
35635665 |
catcctcagaatcgactttttgtccaagaacacaacaatcacacttatatcatcatgaaaatacctcctgttcccatcgccacgtcccagattagcattc |
35635764 |
T |
|
| Q |
122 |
atcatgttattacaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataa |
221 |
Q |
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| T |
35635765 |
ttcatggtattataggtagaattcctattagcagccgcttgtgctagaacagtactcacaagcctttttgcaattccctgaaaaaatcaccatagcataa |
35635864 |
T |
|
| Q |
222 |
ctaaatcaaaagccagcaaacataacggtaat |
253 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
35635865 |
ctaaatcaaaagccagcaaacataacagtaat |
35635896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 35634276 - 35634328
Alignment:
| Q |
39 |
ttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctg |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35634276 |
ttttgtcaaagaacacaacaatcacacttatatcatcacgaaaagacctcctg |
35634328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 35632435 - 35632479
Alignment:
| Q |
47 |
aagaacacaacaatcacacttatatcatcatgaaaagacctcctg |
91 |
Q |
| |
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||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
35632435 |
aagaacaaaacaatgacacttatatcatcatgaaaagacctcctg |
35632479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 10299599 - 10299377
Alignment:
| Q |
30 |
gaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcctgttcccattgccacgtcccagattagcatgcatcatgtt |
129 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | || ||||| |||||| | ||| | || || |
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| T |
10299599 |
gaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctccggctcacattgttgcgtcccgtagcagcggcctgaatctt |
10299500 |
T |
|
| Q |
130 |
attacaggtaacattcccattagcagccgcttccactagaacagtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatca |
229 |
Q |
| |
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|| ||||||| |||| | ||| ||| || ||||| | ||||||| ||||||||||||||||||||||||||||||||| || |||| ||||| | |
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| T |
10299499 |
cctataggtaaccttccttcttttagcagctaccgctagagcggtactcagaagcctttttgcaattccctgcaaaatccaccacagaataattaaatta |
10299400 |
T |
|
| Q |
230 |
aaagccagcaaacataacggtaa |
252 |
Q |
| |
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|||||| ||||| ||||| |||| |
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|
| T |
10299399 |
aaagcctgcaaatataactgtaa |
10299377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 10320031 - 10319972
Alignment:
| Q |
30 |
gaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcc |
89 |
Q |
| |
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|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10320031 |
gaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctcc |
10319972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 10337147 - 10337088
Alignment:
| Q |
30 |
gaaaagacgttttgtcaaagaacacaacaatcacacttatatcatcatgaaaagacctcc |
89 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
10337147 |
gaaacgacgttttgtccaagaacaccacaatcacacttatatcatcatgaaaagacctcc |
10337088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 10319888 - 10319809
Alignment:
| Q |
173 |
gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaa |
252 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |
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| T |
10319888 |
gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaa |
10319809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 10337004 - 10336925
Alignment:
| Q |
173 |
gtactcacaagcctttttgcaattccctgcaaaatccaccaaagcataactaaatcaaaagccagcaaacataacggtaa |
252 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| || |||| ||||| ||||||| ||||| ||||| |||| |
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|
| T |
10337004 |
gtactcagaagccttttcgcaattccctgcaaaatccaccacagaataattaaattaaaagcctgcaaatataactgtaa |
10336925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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