View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0551_low_15 (Length: 273)

Name: NF0551_low_15
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0551_low_15
NF0551_low_15
[»] chr6 (2 HSPs)
chr6 (53-237)||(32980944-32981130)
chr6 (86-127)||(9024175-9024216)
[»] chr7 (2 HSPs)
chr7 (88-126)||(2525844-2525882)
chr7 (86-122)||(38134410-38134446)
[»] chr5 (2 HSPs)
chr5 (86-128)||(28296347-28296389)
chr5 (86-127)||(40211975-40212016)
[»] chr4 (1 HSPs)
chr4 (86-124)||(25390888-25390926)
[»] chr2 (3 HSPs)
chr2 (86-127)||(45000845-45000886)
chr2 (86-126)||(18570991-18571031)
chr2 (86-126)||(31026714-31026754)
[»] chr3 (1 HSPs)
chr3 (86-126)||(40697858-40697898)
[»] chr1 (1 HSPs)
chr1 (86-126)||(19637787-19637827)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 32980944 - 32981130
Alignment:
Q  53 catacaccagacatgacacaaacattgagacatgaaaatgacataattcaatatattcatatgtgtcggtgtcgtcggacacggacatgcctttga--tc 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||  ||    
T  32980944 catacaccagacatgacacaaacattgagacatgtaaatgacataattcaatataatcatatgtgtcggtgtcgtcagacactgacatgcctttgagatc 32981043  T
Q  151 agacgtgttggtgctacaaagatcatgacaaacatgcaatccaaatcaaaattacctgtcaatactatagctttcacatcattcctc 237  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32981044 ggacgtgttggtgctacaaagatcatgacaaacatgcaatccaaatcaaaattacctgtcaatactatagctttcacatcattcctc 32981130  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 9024216 - 9024175
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcgt 127  Q
    ||||||||||||||||||| || ||||||||||| |||||||    
T  9024216 gaaaatgacataattcaatgtaatcatatgtgtcagtgtcgt 9024175  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 2525882 - 2525844
Alignment:
Q  88 aaatgacataattcaatatattcatatgtgtcggtgtcg 126  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  2525882 aaatgacataattcaatataatcatatgtgtcggtgtcg 2525844  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 38134446 - 38134410
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggt 122  Q
    ||||||||||||||||||| || ||||||||||||||    
T  38134446 gaaaatgacataattcaatgtaatcatatgtgtcggt 38134410  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 28296347 - 28296389
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcgtc 128  Q
    ||||||||||||||||||| || |||||||||| |||||||||    
T  28296347 gaaaatgacataattcaatgtactcatatgtgttggtgtcgtc 28296389  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 40211975 - 40212016
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcgt 127  Q
    |||||| ||||||||||||||| |||||||| ||||||||||    
T  40211975 gaaaattacataattcaatataatcatatgtatcggtgtcgt 40212016  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 25390926 - 25390888
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgt 124  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  25390926 gaaaatgacataattcaatataaccatatgtgtcggtgt 25390888  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 45000886 - 45000845
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcgt 127  Q
    |||||||||| |||||||| || |||||||||||||||||||    
T  45000886 gaaaatgacacaattcaatgtaatcatatgtgtcggtgtcgt 45000845  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 18570991 - 18571031
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcg 126  Q
    ||||||||||||||||||| || ||||||||||| ||||||    
T  18570991 gaaaatgacataattcaatgtaatcatatgtgtcagtgtcg 18571031  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 31026714 - 31026754
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcg 126  Q
    ||||||||||||||||||| || |||||| |||||||||||    
T  31026714 gaaaatgacataattcaatgtaatcatatatgtcggtgtcg 31026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 40697898 - 40697858
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcg 126  Q
    ||||||||||||||||||| ||  |||||||||||||||||    
T  40697898 gaaaatgacataattcaatctaaccatatgtgtcggtgtcg 40697858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 19637787 - 19637827
Alignment:
Q  86 gaaaatgacataattcaatatattcatatgtgtcggtgtcg 126  Q
    ||||||||||| ||||||| || ||||||||||||||||||    
T  19637787 gaaaatgacattattcaatgtaatcatatgtgtcggtgtcg 19637827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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