View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0551_low_18 (Length: 261)
Name: NF0551_low_18
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_low_18 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 30 - 261
Target Start/End: Complemental strand, 7081542 - 7081311
Alignment:
| Q |
30 |
gttttcactgcaacccaaaaccctcatcatcacataccttatgaacaatacacaatggagatttgcatgacagagcttgatcctattcttgccggaaaat |
129 |
Q |
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| T |
7081542 |
gttttcactgcaacccaaaaccctcatcatcacataccttatgaacaatacacaatggagatttgcatgacagagcttgatcctattcttgccggaaaat |
7081443 |
T |
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| Q |
130 |
tcttcaggcgacccgacgaggagaaatccggcaactcttccggaaaacaaatgacagaacttactggtataaatgaaatcaacaaagaagcattcatttg |
229 |
Q |
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| T |
7081442 |
tcttcaggcgacccgacgaggagaaatccggcaactcttccggaaatcaaatgacagaacttactggtataaatgaaatcaacaaagaagcattcatttg |
7081343 |
T |
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| Q |
230 |
tgattttgcatttgatccttgtggctattcaa |
261 |
Q |
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| T |
7081342 |
tgattttgcatttgatccttgtggctattcaa |
7081311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 261
Target Start/End: Original strand, 49020329 - 49020506
Alignment:
| Q |
84 |
atggagatttgcatgacagagcttgatcctattcttgccggaaaattcttcaggcgacccgacgaggagaaatccggcaactcttccggaaaacaaatga |
183 |
Q |
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| T |
49020329 |
atggagatatgcatgacagagctagaccctattctagctcggaaattcttccggccacccggagatggaaaaactggtgactcagccggaaaagagatga |
49020428 |
T |
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| Q |
184 |
cagaacttactggtataaatgaaatcaacaaagaagcattcatttgtgattttgcatttgatccttgtggctattcaa |
261 |
Q |
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| T |
49020429 |
cggagcttactggaatcaatgaaataaacccaaatgcattcatttgtgactttgcatttgatccttgtggatattcaa |
49020506 |
T |
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