View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0551_low_2 (Length: 503)

Name: NF0551_low_2
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0551_low_2
NF0551_low_2
[»] chr8 (2 HSPs)
chr8 (115-179)||(29262656-29262720)
chr8 (321-375)||(26154906-26154960)
[»] chr6 (3 HSPs)
chr6 (198-291)||(27707864-27707957)
chr6 (218-291)||(27727710-27727783)
chr6 (111-165)||(27613227-27613279)
[»] chr2 (1 HSPs)
chr2 (326-375)||(40274765-40274814)
[»] scaffold0349 (1 HSPs)
scaffold0349 (218-291)||(6289-6362)
[»] chr4 (1 HSPs)
chr4 (321-375)||(1558766-1558820)
[»] chr1 (1 HSPs)
chr1 (321-374)||(48769520-48769573)
[»] chr5 (1 HSPs)
chr5 (321-375)||(18979488-18979542)
[»] chr3 (1 HSPs)
chr3 (100-145)||(3062027-3062072)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 179
Target Start/End: Original strand, 29262656 - 29262720
Alignment:
Q  115 ttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacattttaaag 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29262656 ttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacattttaaag 29262720  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 26154960 - 26154906
Alignment:
Q  321 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 375  Q
    |||| ||||||| |||||| |||||| |||||||||||||||| |||||||||||    
T  26154960 atcataagtagcgattttagatgaggtagcttgcttgcttagatttggatcccca 26154906  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 27707864 - 27707957
Alignment:
Q  198 acagattcacccaaagaagaataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt 291  Q
    |||| |||||||||| ||||||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||||| || || ||||||||    
T  27707864 acagtttcacccaaaaaagaataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt 27707957  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 27727710 - 27727783
Alignment:
Q  218 ataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt 291  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||||| || || ||||||||    
T  27727710 ataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt 27727783  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 27613227 - 27613279
Alignment:
Q  111 tttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaa 165  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||    
T  27613227 tttgttcctttcctgtc--gagctcatggaacttgggaagaaaatagttgatcaa 27613279  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 40274814 - 40274765
Alignment:
Q  326 aagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 375  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40274814 aagtagctattttagatgaggcagcttgcttgcttagaattggatcccca 40274765  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 6289 - 6362
Alignment:
Q  218 ataataaccctacagctgcaaagagtatacaactaaaaagaaattcactgtgcctgatatgttacaaatcattt 291  Q
    ||||||| |||||| |||||||||| ||||||| |||||||||||||||| |||||||| || || ||||||||    
T  6289 ataataatcctacaactgcaaagagcatacaacaaaaaagaaattcactgagcctgatacgtcaccaatcattt 6362  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 1558766 - 1558820
Alignment:
Q  321 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 375  Q
    |||| |||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  1558766 atcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccca 1558820  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 48769573 - 48769520
Alignment:
Q  321 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccc 374  Q
    |||| |||||||||||||| ||||||||||||||||||||||  ||||||||||    
T  48769573 atcataagtagctattttagatgaggcagcttgcttgcttaggtttggatcccc 48769520  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 18979542 - 18979488
Alignment:
Q  321 atcagaagtagctattttaaatgaggcagcttgcttgcttagaattggatcccca 375  Q
    |||| ||||| |||||||| ||||||||||||||||||||||  || ||||||||    
T  18979542 atcataagtatctattttagatgaggcagcttgcttgcttaggtttagatcccca 18979488  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 3062027 - 3062072
Alignment:
Q  100 aaacaagtagttttgttcctttcctctctcgagttcatggaacttg 145  Q
    |||||||| |||||||||||||||||| ||| ||||| ||||||||    
T  3062027 aaacaagtcgttttgttcctttcctctttcgggttcaaggaacttg 3062072  T

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