View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0551_low_24 (Length: 221)

Name: NF0551_low_24
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0551_low_24
NF0551_low_24
[»] chr4 (4 HSPs)
chr4 (1-145)||(2035807-2035951)
chr4 (1-145)||(1990057-1990201)
chr4 (10-145)||(2021628-2021763)
chr4 (1-145)||(2018987-2019131)
[»] chr2 (3 HSPs)
chr2 (16-129)||(40911156-40911269)
chr2 (16-129)||(44968718-44968831)
chr2 (16-129)||(44983033-44983146)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2035807 - 2035951
Alignment:
Q  1 cttttcctttgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2035807 cttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata 2035906  T
Q  101 agatttatactgctgcgacaagccaggtacattcattacgagtat 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2035907 agatttatactgctgcgacaagccaggtacattcattacgagtat 2035951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1990057 - 1990201
Alignment:
Q  1 cttttcctttgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata 100  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  1990057 cttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttcggaagcttgctcaaaggtttgaagata 1990156  T
Q  101 agatttatactgctgcgacaagccaggtacattcattacgagtat 145  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||    
T  1990157 agatctatactgatgcggcaagccaggtacattcattacgagtat 1990201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 2021628 - 2021763
Alignment:
Q  10 tgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttata 109  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||  ||||||||| ||||||||||||||||||||||||||||||||| |    
T  2021628 tgtagaatggacacgttaagaaaacgtcttcctgtttctagttatgagggattaattgaacttcagaagattgctcaaaggtttgaagataagatttaca 2021727  T
Q  110 ctgctgcgacaagccaggtacattcattacgagtat 145  Q
    || ||||||||||| |||||||||||||||||||||    
T  2021728 cttctgcgacaagcaaggtacattcattacgagtat 2021763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 2018987 - 2019131
Alignment:
Q  1 cttttcctttgtagaatggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagata 100  Q
    |||||| | |||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||||||| | ||||  ||||| ||||||||||||    
T  2018987 cttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagata 2019086  T
Q  101 agatttatactgctgcgacaagccaggtacattcattacgagtat 145  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||    
T  2019087 agatttatacttccgcgacaagccaggtacattcattaccagtat 2019131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 40911156 - 40911269
Alignment:
Q  16 atggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctg 115  Q
    |||||||| |||| ||  ||||||||||||||||||   || ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  40911156 atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctg 40911255  T
Q  116 cgacaagccaggta 129  Q
    | ||||||||||||    
T  40911256 caacaagccaggta 40911269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 44968831 - 44968718
Alignment:
Q  16 atggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctg 115  Q
    |||||||| |||| ||  ||||||||||||||||||   || ||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  44968831 atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctg 44968732  T
Q  116 cgacaagccaggta 129  Q
    | ||||||||||||    
T  44968731 caacaagccaggta 44968718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 44983146 - 44983033
Alignment:
Q  16 atggacacgttaagaaaacatcttcctgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtttgaagataagatttatactgctg 115  Q
    |||||||| |||| ||  ||||||||||||||||||   || ||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  44983146 atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaactttggaagattgcccaaaggtttgaagagaagatttatactgctg 44983047  T
Q  116 cgacaagccaggta 129  Q
    | ||||||||||||    
T  44983046 caacaagccaggta 44983033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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