View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0551_low_6 (Length: 400)
Name: NF0551_low_6
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 1695997 - 1696396
Alignment:
| Q |
1 |
taccacaaaatcataataataaaaatcacaaatagta---actattca------tagcataacaaattacgctatattcacgtaaacaccaaaacaaagt |
91 |
Q |
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| T |
1695997 |
taccacaaaatcataataataaaaatcacaaatagtagtaactattcaaaattatagcataacaaattacgctatattcacgtaaacaccaaaacaaagt |
1696096 |
T |
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| Q |
92 |
aataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtccaaacgagataacattccctgcattcaaatttcagnnnnnnnnntca |
191 |
Q |
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| T |
1696097 |
aataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtccaaacgagataacattccctgcattcaaatttca----caaaaatca |
1696192 |
T |
|
| Q |
192 |
atcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactgaactaaagacttctaaaatcaattatcagaaaa-gttaaaatt |
290 |
Q |
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| T |
1696193 |
atcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactgaactaaaaacttccaaaatcgattatcagaaaaagttaaaatt |
1696292 |
T |
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| Q |
291 |
atactttatgcatgcgtgcatgataatcgattatgagaaaaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
390 |
Q |
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| T |
1696293 |
atactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataaactgaaatgatactgaaaagagaagaagaagtgattaacaaacctatg |
1696392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 64 - 394
Target Start/End: Original strand, 1685520 - 1685839
Alignment:
| Q |
64 |
tatattcacgtaaacaccaaaacaaagtaataaacagagaaagagagagtttaattgattacgctggtgagaagaacagtccaaacgagataacattccc |
163 |
Q |
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| T |
1685520 |
tatattcacgtaaacaacaaaacaaagtaataaatagagaaagagagagtttaattagttaccctggtgcgaagaacagtccaaacgagataacattccc |
1685619 |
T |
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| Q |
164 |
tgcattcaaa-tttcagnnnnnnnnntcaatcagaaacatgtatgattaatcgattaacataaaaagctaaaatcaatcgtaactgaactaaagacttct |
262 |
Q |
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| T |
1685620 |
ttcattcaaaatttcagaaaaaaa--tcaatcagaaacatgtatgattaatcgattaacacaaaaagctaaaatcaatcgtaactgaactaaaaacttca |
1685717 |
T |
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| Q |
263 |
aaaatcaattatcag-aaaagttaaaattatactttatgcatgcgtgcatgataatcgattatgagaaaaagttaaaataaactgaaatgatactgaaaa |
361 |
Q |
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| T |
1685718 |
aaaatcgattatcagaaaaagttaaaattatactttatgcatgcatgcatgataatcgattatgataaaaagttaaaataa-----------actgaaaa |
1685806 |
T |
|
| Q |
362 |
gagaagaagaagtgattaacaaacctatgatac |
394 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1685807 |
gagaagaagaagtgattaacaaacctatgatac |
1685839 |
T |
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