View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0551_low_8 (Length: 343)
Name: NF0551_low_8
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 43396561 - 43396732
Alignment:
| Q |
97 |
agtttcttcattaattccccttctttcatctctccggcacaccacattaaaatctccaagaatacaccactccccttcacctctattagcacgctcctcc |
196 |
Q |
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| T |
43396561 |
agtttcttcattaattccccttctttcatctctccggcacaccacattaaaatctccaagaatacaccacgccccttcacctctattagcacgctcctcc |
43396660 |
T |
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| Q |
197 |
actaacgcctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatctct |
269 |
Q |
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| T |
43396661 |
actaacgcctcccacatcct-ctcttagccaccaaatcacatttagaataaacattaaccacaatacatctct |
43396732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 8507639 - 8507701
Alignment:
| Q |
205 |
ctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatct |
267 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| |
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| T |
8507639 |
ctcccacaacctccttttagccaccaaatcacacttagaatacacattgatcacaatacatct |
8507701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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