View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0551_low_9 (Length: 310)
Name: NF0551_low_9
Description: NF0551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0551_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 33965341 - 33965600
Alignment:
| Q |
20 |
aatatgatcataaagtgtatcttgtgctcctaaaaatttgcagcctaagaatgatgctgtgtctgctgaaattctaaatgctactgcttgttttccaatt |
119 |
Q |
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| T |
33965341 |
aatatgatcataaagtgtatcttgtgctcccaaaaatctacaccctaagaatgatgctgtgtctgctgaaattctaaatgctactgcttgttttccaatt |
33965440 |
T |
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| Q |
120 |
gctccaggcgcaggaagaggaaaagtgttctacacattcacaaaattttaccggaaaaagttgaaataacgacgaaaattacaaac---atnnnnnnnnn |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33965441 |
gctccaggtgcaggaagaggaaaagtgttctacacattcacaaaattttaccggaaaaagttgaaataacgacgaaaattacaaacgaaaaaaaaaaaaa |
33965540 |
T |
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| Q |
217 |
nttagcccttaaatttgacgtctctagcactcggtgacctaattagagactaatttcacg |
276 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||| |
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| T |
33965541 |
attagcccttaaatttgtcgtctctagcactcggtgacataattagagactgatttcacg |
33965600 |
T |
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