View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552-Insertion-2 (Length: 619)
Name: NF0552-Insertion-2
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552-Insertion-2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 6 - 619
Target Start/End: Original strand, 2097476 - 2098086
Alignment:
| Q |
6 |
cagcttcctcgtcacgaggtgcagctacaaataggttttgattttgatagttaatgtaaagaataacaaagaaaacaatgagccataaggtcaaattgag |
105 |
Q |
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| T |
2097476 |
cagcttcctcgtcacgaggtgcagctacaaataggttttgattttgatagttaatgtaaagaataacaaagaaaacaatgagccataaggtcaaattgag |
2097575 |
T |
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| Q |
106 |
tatagcaacaatgtttggtaaaatgattgtcaatgctgcgaaggacacagcacatgtaagaccgtacatgagtgagattggaaacaaggtttcaatagtg |
205 |
Q |
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| T |
2097576 |
tatagcaacaatgtttggtaaaatgattgtcaacgctgcgaaggacacagcacatgtaagaccgtacatgagtgagattggaaacaaggtttcaatagtg |
2097675 |
T |
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| Q |
206 |
atatgatctggtataagtaggatggaaaaaatccagagtaagaaaaatatcaaaactgcagctacaacccaaggagtatactgttttgcgaatagcgttt |
305 |
Q |
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| T |
2097676 |
atatgatctggtataag---gatggaaaaaatccaaagtaagaaaaatatcaaaactgcagctacaacccaaggagtatactgttttgcgaatagcgttt |
2097772 |
T |
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| Q |
306 |
cgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctcctaagtctttaatcacctctcccttgaagtt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2097773 |
cgccaatctttgtgaacttgagtgttaccaatgcaaccaaaagtgcaaacattttgtaaatgatgtctcctaagcctttaatcacctctcccttgaagtt |
2097872 |
T |
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| Q |
406 |
gcatttcctcatttccgcctctcctcctatttattcaggtgtttgcatttcctcaatgatgataggatggtaaaactgttgtatcttttcaatcatgatt |
505 |
Q |
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| T |
2097873 |
gcatttcctcatttccgcctctcctcctattttttcaggtgtttgcatttcctcaatgatgataggatggtaaaactgttgtatcttttcattcatgatt |
2097972 |
T |
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| Q |
506 |
tcgtacttttatactagtacttctgtgtcgtcctccaattaaaaaacaaatactccattattagggtatctccaacccgtggtattacattaccaggaaa |
605 |
Q |
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| T |
2097973 |
tcgtacttttatactagtacttctgtgtcgtcctccaattataaaacaaatactccattattagggtatctccaacccgtggtattacattacgaggaaa |
2098072 |
T |
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| Q |
606 |
gtcaccaacacggg |
619 |
Q |
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| T |
2098073 |
gtcaccaacacggg |
2098086 |
T |
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