View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552-Insertion-3 (Length: 626)
Name: NF0552-Insertion-3
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 8 - 177
Target Start/End: Complemental strand, 34095409 - 34095243
Alignment:
| Q |
8 |
gtgttttcattcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttcaaaacctgttgttgttgatgaggaagat |
107 |
Q |
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| T |
34095409 |
gtgttttcattcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttcaaaacctgttgttg---atgaggaagat |
34095313 |
T |
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| Q |
108 |
caaagtgttttttcatcaatgccgctatcctctgcttctctaactgttcaactcctacacctcttagtgg |
177 |
Q |
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| T |
34095312 |
caaagtgttttttcatcaatgccgctatcctctgcttctctaactgttcaactcctacacctcttagtgg |
34095243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 250 - 412
Target Start/End: Complemental strand, 34095170 - 34095009
Alignment:
| Q |
250 |
aagtgaaaagagagaaagagaaaagtgttatgtggtgaaagtgttttgtgtgtttatatagnnnnnnngtgtgagggttttattttatgaaggaaaagga |
349 |
Q |
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| T |
34095170 |
aagtgaaaagagagaaagagaaaagtgttatgtggtgaaagtgttttgtgtgtttatatagaaaaaa-gtgtgagggttttattttatgaaggaaaagga |
34095072 |
T |
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| Q |
350 |
aaatcagaatgtgttggtgaaaattggtgaaaggacattttggtatatgtgtgtaatgctttt |
412 |
Q |
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| T |
34095071 |
aaatcagaatgtgttggtgaaaattggtgaaaggacattttggtatatgtgtgtaatgctttt |
34095009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 536 - 626
Target Start/End: Complemental strand, 34094887 - 34094800
Alignment:
| Q |
536 |
ataattttatttatcacatgtggacacactctctcttgttgctaatccttaattttaagatttgcattttggtttattttgtaggactata |
626 |
Q |
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| T |
34094887 |
ataattttatttatcacatgtggacacactctctcttgttt---atccttaattttaagatttgcattttggtttattttgtaggactata |
34094800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 12294560 - 12294624
Alignment:
| Q |
18 |
tcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttcaaa |
82 |
Q |
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| T |
12294560 |
tcatcatcacttgttgttgaggaaactgaaatgacacatttgatgataatgcaccatacctcaaa |
12294624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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