View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552-Insertion-4 (Length: 394)
Name: NF0552-Insertion-4
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 394
Target Start/End: Complemental strand, 3573993 - 3573611
Alignment:
| Q |
8 |
aatgctgaactagtcttgaccataatgagaaagaatgctgataaatgcagtgaggtctgacactagtttcgaccataattgatgtcatctttgaactaga |
107 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573993 |
aatgctgaactagtcttgaccataatgagaa----tgctgataaatgcagtgaggtctgacactagtttcgaccataattgatgtcatctttgaactaga |
3573898 |
T |
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| Q |
108 |
aagtgtctatttgtgaaacatcatgctagcagccttttgcaatttacaaatgcacacaaaccatgtctctgatcataaattgattgccaattccatgaca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3573897 |
aagtgtctatttgtgaaacatcatgctagcagccttttgcaatttacaaatgcacacaaaccatgtctctgatcataaattgattgccaaatccatgaca |
3573798 |
T |
|
| Q |
208 |
ctgatagtactttctgtgatagcaaaacttttgatcataaattcataattgatcaaatcattatagcagtacaacttaatcatccatagaacaaagttaa |
307 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573797 |
ctgataatactttctgtgatagcaaaacttttgatcataaattcataattgatcaaatcattatagcagtacaacttaatcatccatagaacaaagttaa |
3573698 |
T |
|
| Q |
308 |
atgagcaagataagttaaattgacccttgaactacaattctgctgcatgaatcggagctggtcatacaatcaaccatgccgtccgtt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573697 |
atgagcaagataagttaaattgacccttgaactacaattctgctgcatgaatcggagctggtcatacaatcaaccatgccgtccgtt |
3573611 |
T |
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