View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552-Insertion-5 (Length: 314)
Name: NF0552-Insertion-5
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 28258770 - 28259077
Alignment:
| Q |
7 |
aaatggtcctcaaaattcatgtttttatatgaaataaatagaagacttctattgaatgttagtgtaaaattgatttatatatcaattaagctctccgtcg |
106 |
Q |
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| T |
28258770 |
aaatggtcctcaaaattcatgtttttatatgaaataaatagaagacttctattgaatgttagtgtaaaattgatttatatatcaattaatctctccgtcg |
28258869 |
T |
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| Q |
107 |
ggattaaattgaaagtaaaggtaatctaatgtttaacttggagaaaatgacaagcttaatgccaaataacgagactcgttaatcaattattaccaatttt |
206 |
Q |
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| T |
28258870 |
ggattaaattgaaagtaaaggtaatctaatgtttaacttggataaaatgacaagcttaatgccaaataaccagactcattaatcaattattaccaatttt |
28258969 |
T |
|
| Q |
207 |
ttaacttaatttgcatgcattattattgagnnnnnnnggtcaagtagtcaaaatttcactccttaagatgaattattatccgttcaaatccgactctaca |
306 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28258970 |
ttaacttaatttgcatgcattattattgagtttttttgatcaagtagtcaaaatttcactccttaagatgaattattatccgttcaaatccgactctaca |
28259069 |
T |
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| Q |
307 |
tattgcaa |
314 |
Q |
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| T |
28259070 |
tattgcaa |
28259077 |
T |
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