View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_11 (Length: 477)
Name: NF0552_high_11
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 470
Target Start/End: Complemental strand, 2097482 - 2097042
Alignment:
| Q |
30 |
gaagctgcaactcttgccgaggcagtggcatctggcagcaagctggaagtagaagtaggtttacagaagtttgatgtcaatgggagcagccgtgagctgg |
129 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2097482 |
gaagctgcaactcttgccgaggtagtggcatctggcagcaagctggaagtagaagtaggtttacagaagtttgatgtcaatgggagcagccgtgacctgg |
2097383 |
T |
|
| Q |
130 |
gttggatcagcgacccaggctttgacaccgatggcgaaagcagggttgattgatttggaggagaacatggagacggatgctagctagaaatagagtcaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2097382 |
gttggatcagcgacccaggctttgacaccgatggcgaaagcagggttgattgatttggaggagaacatggagacagatgctagctagaaatagagtcaat |
2097283 |
T |
|
| Q |
230 |
tctgaagattaatcatgtgggagtttcaaaggctctttatctgaaggagtttttgaggnnnnnnnnacgagttttaggtctaagaaaaaccaaggtttgg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||| |
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| T |
2097282 |
tctgaagattaatcatgtgggagtttcaaaggctctttatctgaaggagtttttga-gttttttttacgagtcttaggtctaagaaaaaccaaagtttgg |
2097184 |
T |
|
| Q |
330 |
tctggc-tttagtttggcacgttgttgtgtggaccatttggaatttctgcaatgaaatgatttaatttctccaggggtcttggtttggctgtatcattgg |
428 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097183 |
tctggcttttagtttggcacgttgttgtgtgaaccatttggaatttctgcaatgaaatgatttaatttctccaggggtcttggtttggctgtatcattgg |
2097084 |
T |
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| Q |
429 |
ttctctctgatgttgggggttctgtggggggtttctctgctg |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2097083 |
ttctctctgatgttgggggttctgtggggggtttctctgctg |
2097042 |
T |
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