View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_14 (Length: 446)
Name: NF0552_high_14
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 77 - 234
Target Start/End: Complemental strand, 17330572 - 17330415
Alignment:
| Q |
77 |
accctttgaatcttaatttttatttggtcttttaaaagattgcattgaagttttaagccaaataggtatctgaatttagcttaaaagtatcaaacttctt |
176 |
Q |
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| T |
17330572 |
accctttgaatcttaatttttatttggtcttttaaaagattgcattgatgttttaagccaaataggtacctgaatttaactaaaaggtatcaaacttctt |
17330473 |
T |
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| Q |
177 |
atggcgtttgatagagttcctttgccacctccgtggatcaaagaagatagagggaatt |
234 |
Q |
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| T |
17330472 |
atggcgtttgatagagttcctttgccacctccgtggatcaaagaagatagagggaatt |
17330415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 312 - 433
Target Start/End: Complemental strand, 17330080 - 17329960
Alignment:
| Q |
312 |
ttcaccacttctggcacatcttgaaaaacaaaaagaacctttatctgcttgacccatcaatcataatttgttccaccttcaagcagtggtaggataccac |
411 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17330080 |
ttcaccacttctgacacatcttgaaaaacaaaaagaacctttatctgcttgacccatcaatcataatttgttccaccttcaagcagt-gtaggatacctt |
17329982 |
T |
|
| Q |
412 |
tgaatttcaccatgagttacct |
433 |
Q |
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| T |
17329981 |
tgaatttcaccatgagttacct |
17329960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17330645 - 17330594
Alignment:
| Q |
1 |
tctatttgttattacaccttaaacataatcaatcattagatccacaaccatt |
52 |
Q |
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| T |
17330645 |
tctatttgttattacaccttaaagataatcaatcattagatccgcaaccatt |
17330594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 4434131 - 4434282
Alignment:
| Q |
77 |
accctttgaatcttaatttttatttggtcttttaaaagattgcattgaagttttaagccaaatagg-tatctgaatttagcttaaaagtatcaaacttct |
175 |
Q |
| |
|
||||||||||||| | || || ||||||||||| ||||| ||||||||||||| ||||||| || |||| |||| ||||| ||| | |||||| |||| |
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| T |
4434131 |
accctttgaatctgagttattgtttggtcttttgaaagaccgcattgaagtttttagccaaaagggttatc-gaatctagctgaaaggaatcaaatttct |
4434229 |
T |
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| Q |
176 |
tatggcgtttgatagagttcctttgccacctccgtggatcaaagaagatagag |
228 |
Q |
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| ||| |||| | |||||| | | |||||||| |||||||||||||| |||| |
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| T |
4434230 |
tctgggttttgttggagttcttcttccacctccatggatcaaagaagagagag |
4434282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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