View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0552_high_19 (Length: 396)
Name: NF0552_high_19
Description: NF0552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0552_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 84 - 367
Target Start/End: Original strand, 5401246 - 5401529
Alignment:
| Q |
84 |
atgaaaggaaaaaagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacct |
183 |
Q |
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| T |
5401246 |
atgaaaggaaaaaagtggacaaatgtgagcttcttagggtattttgtatattaccattgaaataaaaggctaatgagaataatgtgtaatgcactaacct |
5401345 |
T |
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| Q |
184 |
cttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatcttaccgat |
283 |
Q |
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| T |
5401346 |
cttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgaggcgtggcacatcctctgtgaagggggactcatgaggtttgatcttaccgat |
5401445 |
T |
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| Q |
284 |
gatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttg |
367 |
Q |
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| T |
5401446 |
gatttcgaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggcttg |
5401529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 172 - 365
Target Start/End: Original strand, 5395187 - 5395380
Alignment:
| Q |
172 |
atgcactaacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggttt |
271 |
Q |
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| T |
5395187 |
atgcaccaacctcttctaacaagatatcctcctgtgtgtaatagaaattgggtgtgacaaggcgtggcacatcctccgtgaagggggactcatgggcctt |
5395286 |
T |
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| Q |
272 |
gatcttaccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggct |
365 |
Q |
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| T |
5395287 |
gatcttaccgatcgtttcgaaggatcctaggtagtgcttagttcctgtttgaagggacacatggcaaagattgagagtatttgggatgagggct |
5395380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 365
Target Start/End: Original strand, 5391383 - 5391569
Alignment:
| Q |
179 |
aacctcttcgaacaagatatcctctaatgtgtaatagaaattgggtgtgtcgagacgtggcacgttctctgtgaagggggactcgtgaggtttgatctta |
278 |
Q |
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||||||||| | ||||||||||||| ||||| |||||||||||||||| | || |||||||| | ||| ||||| |||||||| || || ||||||||| |
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| T |
5391383 |
aacctcttctagcaagatatcctcttgtgtgtgatagaaattgggtgtgacaaggcgtggcacatcctccgtgaaaggggactcatggggcttgatctta |
5391482 |
T |
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| Q |
279 |
ccgatgatttcaaagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggattagggct |
365 |
Q |
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| T |
5391483 |
ccgactatttcaaaggatccaaagtagtgcttgattcccgtttgaagggacacatgacaaagattcagagtatttgggatgagggct |
5391569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 358
Target Start/End: Complemental strand, 47349625 - 47349558
Alignment:
| Q |
291 |
aagggtcctacatagtgcttggcaccagtctgaagagacacatgggaaagatttggagcatttgggat |
358 |
Q |
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| T |
47349625 |
aagggtcctaaatagtgtttcccaccagtttgaagagacacgtggcagagattcggagcatttgggat |
47349558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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